| # Copyright 1999-2016 Gentoo Foundation |
| # Distributed under the terms of the GNU General Public License v2 |
| # $Id$ |
| |
| EAPI=6 |
| |
| PYTHON_COMPAT=( python2_7 python3_{3,4,5} pypy ) |
| |
| inherit distutils-r1 eutils |
| |
| DESCRIPTION="Python modules for computational molecular biology" |
| HOMEPAGE="http://www.biopython.org/ https://pypi.python.org/pypi/biopython/" |
| SRC_URI="http://www.biopython.org/DIST/${P}.tar.gz" |
| |
| LICENSE="HPND" |
| SLOT="0" |
| KEYWORDS="amd64 ~ppc ~x86 ~amd64-linux ~x86-linux" |
| IUSE="" |
| |
| RDEPEND=" |
| dev-python/matplotlib[$(python_gen_usedep 'python*')] |
| dev-python/networkx[$(python_gen_usedep 'python*')] |
| dev-python/numpy[$(python_gen_usedep 'python*')] |
| dev-python/rdflib[$(python_gen_usedep 'python*')] |
| dev-python/pygraphviz[$(python_gen_usedep 'python2*')] |
| dev-python/reportlab[$(python_gen_usedep 'python*')] |
| media-gfx/pydot[$(python_gen_usedep 'python2*')] |
| " |
| DEPEND="${RDEPEND} |
| sys-devel/flex" |
| |
| DOCS=( CONTRIB DEPRECATED NEWS README Doc/. ) |
| |
| python_test() { |
| distutils_install_for_testing |
| cp -r "${S}"/{Doc,Tests} "${TEST_DIR}"/lib/ || die |
| cd "${TEST_DIR}"/lib/Tests || die |
| rm test_BioSQL_{psycopg2.py,MySQLdb.py,mysql_connector.py} || die |
| ${PYTHON} run_tests.py --offline --verbose || die |
| } |
| |
| python_install_all() { |
| distutils-r1_python_install_all |
| |
| dodir /usr/share/${PN} |
| cp -r --preserve=mode Scripts Tests "${ED%/}"/usr/share/${PN} || die |
| } |
| |
| pkg_postinst() { |
| elog "For database support you need to install:" |
| optfeature "MySQL" dev-python/mysql-python |
| optfeature "PostGreSQL" dev-python/psycopg |
| elog |
| elog "Some applications need extra packages:" |
| optfeature "EMBOSS (The European Molecular Biology Open Software Suite)" sci-biology/emboss |
| } |
