blob: 62b79f6e6f5740db5426c28d3d257e14f91406e7 [file] [log] [blame]
# Copyright 1999-2013 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
# $Id$
EAPI="4"
inherit autotools eutils toolchain-funcs
DESCRIPTION="Assembly By Short Sequences - a de novo, parallel, paired-end sequence assembler"
HOMEPAGE="http://www.bcgsc.ca/platform/bioinfo/software/abyss/"
SRC_URI="http://www.bcgsc.ca/downloads/abyss/${P}.tar.gz"
LICENSE="abyss"
SLOT="0"
IUSE="+mpi openmp"
KEYWORDS="amd64 x86"
DEPEND="
dev-cpp/sparsehash
dev-libs/boost
mpi? ( virtual/mpi )"
RDEPEND="${DEPEND}"
# todo: --enable-maxk=N configure option
# todo: fix automagic mpi toggling
src_prepare() {
tc-export AR
epatch \
"${FILESDIR}"/${P}-gcc-4.7.patch \
"${FILESDIR}"/${P}-ac_prog_ar.patch
sed -i -e "s/-Werror//" configure.ac || die #365195
sed -i -e "/dist_pkgdoc_DATA/d" Makefile.am || die
eautoreconf
}
src_configure() {
econf \
--docdir="${EPREFIX}/usr/share/doc/${PF}" \
$(use_enable openmp)
}