blob: 91c1f69f9756b8c43e994b94c84554ace58c4302 [file] [log] [blame]
# Copyright 1999-2016 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
# $Id$
EAPI=6
PYTHON_COMPAT=( python2_7 )
inherit flag-o-matic python-r1
DESCRIPTION="A Modular, Open-Source whole genome assembler"
HOMEPAGE="http://amos.sourceforge.net/"
SRC_URI="mirror://sourceforge/${PN}/${P}.tar.gz
https://dev.gentoo.org/~soap/distfiles/${PN}-3.1.0-fix-c++14.patch.bz2"
LICENSE="Artistic"
SLOT="0"
KEYWORDS="~amd64 ~x86"
IUSE="qt4"
DEPEND="qt4? ( dev-qt/qtcore:4 )"
RDEPEND="${DEPEND}
dev-perl/DBI
dev-perl/Statistics-Descriptive
sci-biology/mummer"
PATCHES=(
"${FILESDIR}"/${P}-gcc-4.7.patch
"${FILESDIR}"/${P}-goBambus2.py-indent-and-cleanup.patch
"${WORKDIR}"/${P}-fix-c++14.patch
"${FILESDIR}"/${P}-qa-Wformat.patch
)
src_configure() {
# prevent GCC 6 log pollution due to hash_map deprecation in C++11
append-cxxflags -Wno-cpp
default
}
src_compile() {
emake -j1
}
src_install() {
default
python_replicate_script "${ED%/}/usr/bin/goBambus2"
}