| # Copyright 1999-2010 Gentoo Foundation |
| # Distributed under the terms of the GNU General Public License v2 |
| # $Header: /var/cvsroot/gentoo-x86/sci-biology/hmmer/hmmer-3.0_beta2.ebuild,v 1.2 2010/01/01 21:52:57 fauli Exp $ |
| |
| EAPI="2" |
| |
| MY_P="hmmer-3.0b2" |
| |
| DESCRIPTION="Sequence analysis using profile hidden Markov models" |
| HOMEPAGE="http://hmmer.janelia.org/" |
| SRC_URI="ftp://selab.janelia.org/pub/software/hmmer3/${MY_P}.tar.gz" |
| |
| LICENSE="GPL-3" |
| SLOT="0" |
| IUSE="sse mpi threads" # gsl |
| KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux ~ppc-macos" |
| |
| # NB: compile failure with mpi, disabling temporarily |
| # gsl? ( sci-libs/gsl ) |
| # mpi? ( virtual/mpi ) |
| DEPEND="" |
| RDEPEND="${DEPEND}" |
| |
| S="${WORKDIR}/${MY_P}" |
| |
| src_configure() { |
| econf $(use_enable sse) \ |
| $(use_enable threads) || die |
| # $(use_enable mpi) \ |
| # $(use_with gsl) || die |
| } |
| |
| src_compile() { |
| emake -j1 || die |
| } |
| |
| src_install() { |
| emake DESTDIR="${D}" install || die |
| dolib src/libhmmer.a || die |
| dolib easel/libeasel.a || die |
| insinto /usr/share/${PN} |
| doins -r tutorial || die |
| dodoc RELEASE-NOTES Userguide.pdf |
| } |