| # Copyright 1999-2013 Gentoo Foundation |
| # Distributed under the terms of the GNU General Public License v2 |
| # $Id$ |
| |
| EAPI=5 |
| |
| EANT_BUILD_TARGET="dist" |
| EANT_NEEDS_TOOLS="true" |
| JAVA_ANT_REWRITE_CLASSPATH="true" |
| |
| inherit java-pkg-2 java-ant-2 vcs-snapshot |
| |
| DESCRIPTION="The Genome Analysis Toolkit" |
| HOMEPAGE="http://www.broadinstitute.org/gsa/wiki/index.php/The_Genome_Analysis_Toolkit" |
| SRC_URI="https://github.com/broadgsa/gatk/archive/${PV}.tar.gz -> ${P}.tar.gz" |
| |
| LICENSE="MIT" |
| SLOT="0" |
| IUSE="" |
| KEYWORDS="~amd64" |
| |
| COMMON_DEPS="" |
| DEPEND=" |
| >=virtual/jdk-1.6 |
| ${COMMON_DEPS}" |
| RDEPEND=" |
| >=virtual/jre-1.6 |
| ${COMMON_DEPS}" |
| |
| src_prepare() { |
| sed -i '/property name="ivy.home"/ s|${user.home}|'${WORKDIR}'|' build.xml || die |
| java-pkg-2_src_prepare |
| } |
| |
| src_install() { |
| java-pkg_dojar dist/*.jar |
| java-pkg_dolauncher GenomeAnalysisTK --jar GenomeAnalysisTK.jar |
| java-pkg_dolauncher AnalyzeCovariates --jar AnalyzeCovariates.jar |
| } |
