| <?xml version="1.0" encoding="UTF-8"?> |
| <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> |
| <pkgmetadata> |
| <maintainer type="project"> |
| <email>haskell@gentoo.org</email> |
| <name>Gentoo Haskell</name> |
| </maintainer> |
| <longdescription> |
| This is a collection of data structures and algorithms |
| useful for building bioinformatics-related tools |
| and utilities. |
| |
| Current list of features includes: a Sequence data type supporting |
| protein and nucleotide sequences and conversion between them. As of version |
| 0.4, different kinds of sequence have different types. Support for quality |
| data, reading and writing Fasta formatted files, reading TwoBit and |
| phd formats, and Roche/454 SFF files. Rudimentary (i.e. unoptimized) support |
| for doing alignments - including dynamic adjustment of scores based on sequence quality. |
| Also Blast output parsing. Partly implemented single linkage clustering, and |
| multiple alignment. Reading Gene Ontology (GO) annotations (GOA) and |
| definitions\/hierarchy. |
| |
| The Darcs repository is at: <http://malde.org/~ketil/biohaskell/biolib>. |
| </longdescription> |
| </pkgmetadata> |