| # ChangeLog for sci-biology/emboss |
| # Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2 |
| # $Header: /var/cvsroot/gentoo-x86/sci-biology/emboss/ChangeLog,v 1.75 2015/07/23 20:18:07 pacho Exp $ |
| |
| 23 Jul 2015; Pacho Ramos <pacho@gentoo.org> emboss-6.6.0.ebuild: |
| ppc stable wrt bug #529038 |
| |
| 07 May 2015; Justin Lecher <jlec@gentoo.org> emboss-6.6.0.ebuild, |
| files/emboss-6.6.0_fix-build-system.patch: |
| Correct Licenses, bug #548810; make build with newer plplot, bug #548806; add |
| missing dep, bug #544516 |
| |
| 28 Mar 2015; Justin Lecher <jlec@gentoo.org> -emboss-6.1.0-r1.ebuild, |
| -emboss-6.3.1_p4.ebuild: |
| Drop old |
| |
| *emboss-6.6.0 (28 Mar 2015) |
| |
| 28 Mar 2015; Justin Lecher <jlec@gentoo.org> +emboss-6.6.0.ebuild, |
| +files/README.gentoo, +files/emboss-6.6.0_FORTIFY_SOURCE-fix.patch, |
| +files/emboss-6.6.0_fix-build-system.patch, |
| +files/emboss-6.6.0_plplot-declarations.patch, |
| +files/emboss-6.6.0_qa-implicit-declarations.patch, metadata.xml: |
| Import latest changes from science overlay, thanks Ted Tanberry for the work; |
| fixes #504680 |
| |
| 28 Dec 2014; Aaron W. Swenson <titanofold@gentoo.org> emboss-6.3.1_p4.ebuild, |
| emboss-6.3.1_p4-r1.ebuild: |
| Rename virtual/postgresql to dev-db/postgresql |
| |
| 03 Nov 2014; Aaron W. Swenson <titanofold@gentoo.org> emboss-6.3.1_p4.ebuild, |
| emboss-6.3.1_p4-r1.ebuild: |
| Update PostgreSQL dependencies and/or checks to virtual/postgresql. |
| |
| 30 Jul 2014; Brian Evans <grknight@gentoo.org> emboss-6.0.1.ebuild, |
| emboss-6.1.0-r1.ebuild, emboss-6.3.1_p4-r1.ebuild, emboss-6.3.1_p4.ebuild: |
| Non-maintainer commit. Update to use virtual/mysql wrt bug 508802 |
| |
| *emboss-6.3.1_p4-r1 (19 Nov 2012) |
| |
| 19 Nov 2012; Justin Lecher <jlec@gentoo.org> +emboss-6.3.1_p4-r1.ebuild, |
| +files/emboss-6.3.1_p4-r1_plcol.patch: |
| Fix compilation problem with toplplot, #391669, thanks Juergen Rose for the |
| patch |
| |
| 26 Apr 2012; Justin Lecher <jlec@gentoo.org> -emboss-6.1.0.ebuild: |
| Drop old |
| |
| 20 Oct 2011; Kacper Kowalik <xarthisius@gentoo.org> emboss-6.3.1_p4.ebuild, |
| emboss-6.1.0.ebuild, emboss-6.1.0-r1.ebuild, emboss-6.0.1.ebuild: |
| Fix SRC_URI |
| |
| 26 Jul 2011; Kacper Kowalik <xarthisius@gentoo.org> emboss-6.0.1.ebuild, |
| emboss-6.1.0.ebuild, emboss-6.1.0-r1.ebuild, emboss-6.3.1_p4.ebuild: |
| ppc64 keyword dropped |
| |
| 04 Apr 2011; Justin Lecher <jlec@gentoo.org> -emboss-4.0.0.ebuild, |
| emboss-6.0.1.ebuild, emboss-6.1.0.ebuild: |
| Dropped old, fix for wrong EAPI version, #361919 |
| |
| 11 Mar 2011; Justin Lecher <jlec@gentoo.org> emboss-6.3.1_p4.ebuild, |
| metadata.xml: |
| Remove largefile USE support and default to it |
| |
| 09 Mar 2011; Raúl Porcel <armin76@gentoo.org> emboss-4.0.0.ebuild, |
| emboss-6.0.1.ebuild, emboss-6.1.0.ebuild, emboss-6.1.0-r1.ebuild, |
| emboss-6.3.1_p4.ebuild: |
| Drop sparc keywords |
| |
| 09 Mar 2011; Justin Lecher <jlec@gentoo.org> emboss-6.3.1_p4.ebuild: |
| EAPI=4 takes three arguments on use_with |
| |
| *emboss-6.3.1_p4 (09 Mar 2011) |
| |
| 09 Mar 2011; Justin Lecher <jlec@gentoo.org> |
| +files/6.3.1_p4-unbundle-libs.patch, -files/6.3.1-unbundle-libs.patch, |
| -emboss-6.3.1.ebuild, +emboss-6.3.1_p4.ebuild: |
| Bump to latest upstream patches |
| |
| *emboss-6.3.1 (09 Mar 2011) |
| |
| 09 Mar 2011; Justin Lecher <jlec@gentoo.org> |
| +files/6.3.1-unbundle-libs.patch, +files/emboss-README.Gentoo-2, |
| emboss-4.0.0.ebuild, emboss-6.0.1.ebuild, emboss-6.1.0-r1.ebuild, |
| +emboss-6.3.1.ebuild, metadata.xml: |
| Version Bump #335603, Unbundled libs, removed old, fix clash with |
| /usr/bin/digest, #330507 |
| |
| 18 Jul 2010; <nixnut@gentoo.org> emboss-6.0.1.ebuild: |
| ppc stable #325457 |
| |
| 09 Jul 2010; Samuli Suominen <ssuominen@gentoo.org> emboss-6.0.1.ebuild: |
| ppc64 stable wrt #325457 |
| |
| 23 Jun 2010; Justin Lecher <jlec@gentoo.org> emboss-4.0.0.ebuild, |
| emboss-6.0.1.ebuild, emboss-6.1.0.ebuild, emboss-6.1.0-r1.ebuild: |
| Blocking sys-devel/cons, bug 248792 |
| |
| *emboss-6.1.0-r1 (07 Mar 2010) |
| |
| 07 Mar 2010; Justin Lecher (jlec) <jlec@gentoo.org> |
| +emboss-6.1.0-r1.ebuild: |
| Moved to EAPI=3 for PREFIX support, imported prefix patches from overlay, |
| keyworded as in overlay |
| |
| 01 Sep 2009; Olivier Fisette <ribosome@gentoo.org> metadata.xml: |
| Giving up maintainership of this package. |
| |
| 01 Sep 2009; Olivier Fisette <ribosome@gentoo.org> emboss-6.1.0.ebuild: |
| Remove documentation that conflicts with EMBASSY phylipnew. |
| |
| *emboss-6.1.0 (01 Sep 2009) |
| |
| 01 Sep 2009; Olivier Fisette <ribosome@gentoo.org> +emboss-6.1.0.ebuild: |
| New upstream version. |
| |
| 01 Sep 2009; Olivier Fisette <ribosome@gentoo.org> emboss-6.0.1.ebuild: |
| Stabilised on x86 and amd64. |
| |
| 31 Aug 2009; Olivier Fisette <ribosome@gentoo.org> emboss-4.0.0.ebuild, |
| emboss-6.0.1.ebuild: |
| Q.A. fixes, including better dependency on ClustalW. |
| |
| 27 Aug 2008; Olivier Fisette <ribosome@gentoo.org> -emboss-5.0.0.ebuild: |
| Pruning version that will never be stabilised. |
| |
| 27 Aug 2008; Olivier Fisette <ribosome@gentoo.org> emboss-4.0.0.ebuild: |
| Depend on ClustalW 1.83 since version 2.x will soon be added to Portage |
| and is incompatible with EMBOSS wrapper programs. |
| |
| *emboss-6.0.1 (26 Aug 2008) |
| |
| 26 Aug 2008; Olivier Fisette <ribosome@gentoo.org> +emboss-6.0.1.ebuild: |
| New upstream version. |
| |
| 25 Jan 2008; Markus Dittrich <markusle@gentoo.org> |
| +files/emboss-5.0.0-as-needed.patch, emboss-4.0.0.ebuild, |
| emboss-5.0.0.ebuild: |
| Fixed unresolved symbols with as-needed (see bug #207304). |
| |
| 22 Jul 2007; Donnie Berkholz <dberkholz@gentoo.org>; emboss-4.0.0.ebuild: |
| Drop virtual/x11 references. |
| |
| 18 Jul 2007; Olivier Fisette <ribosome@gentoo.org> |
| +files/emboss-README.Gentoo-1: |
| Added updated Gentoo README file in reStructuredText format. |
| |
| *emboss-5.0.0 (18 Jul 2007) |
| |
| 18 Jul 2007; Olivier Fisette <ribosome@gentoo.org> +emboss-5.0.0.ebuild: |
| New upstream version. |
| |
| 09 Apr 2007; Jeff Gardner <je_fro@gentoo.org> +files/22emboss, |
| -files/22emboss-r1, emboss-4.0.0.ebuild: |
| Fixed to use doenvd wrt bug #173884 |
| |
| 10 Dec 2006; Olivier Fisette <ribosome@gentoo.org> |
| -emboss-3.0.0-r1.ebuild, emboss-4.0.0.ebuild: |
| Pruned old version. Removed ppc-macos keyword, as grobian said the |
| package and its dependencies were fully moved into "prefix". |
| |
| 20 Nov 2006; <blubb@gentoo.org> emboss-4.0.0.ebuild: |
| stable on amd64 |
| |
| 15 Nov 2006; Markus Rothe <corsair@gentoo.org> emboss-4.0.0.ebuild: |
| Stable on ppc64; bug #153766 |
| |
| 03 Nov 2006; nixnut <nixnut@gentoo.org> emboss-4.0.0.ebuild: |
| Stable on ppc wrt bug 153766 |
| |
| 03 Nov 2006; Jeff Gardner <je_fro@gentoo.org> emboss-3.0.0-r1.ebuild: |
| Added ~sparc to emboss-3 for embassy-phylip-3.6b. |
| |
| 02 Nov 2006; Olivier Fisette <ribosome@gentoo.org> emboss-4.0.0.ebuild: |
| Added to x86. |
| |
| 18 Aug 2006; Jason Wever <weeve@gentoo.org> emboss-4.0.0.ebuild: |
| Added ~sparc keyword wrt bug #144241. |
| |
| *emboss-4.0.0 (21 Jul 2006) |
| |
| 21 Jul 2006; Olivier Fisette <ribosome@gentoo.org> +emboss-4.0.0.ebuild: |
| New upstream version. See change log: |
| "http://emboss.sourceforge.net/developers/changelog.html". |
| |
| 20 Apr 2006; Olivier Fisette <ribosome@gentoo.org> -emboss-3.0.0.ebuild: |
| Removed old revision. |
| |
| 08 Apr 2006; Simon Stelling <blubb@gentoo.org> emboss-3.0.0-r1.ebuild: |
| stable on amd64 |
| |
| 22 Feb 2006; Fabian Groffen <grobian@gentoo.org> ChangeLog: |
| Marked ppc-macos stable (bug #123332) |
| |
| 22 Feb 2006; <nixnut@gentoo.org> emboss-3.0.0-r1.ebuild: |
| Stable on ppc. bug 123332 |
| |
| 21 Feb 2006; Markus Rothe <corsair@gentoo.org> emboss-3.0.0-r1.ebuild: |
| Stable on ppc64; bug #123332 |
| |
| 20 Feb 2006; Joshua Jackson <tsunam@gentoo.org> emboss-3.0.0-r1.ebuild: |
| Stable on x86; bug #123332 |
| |
| 19 Feb 2006; Olivier Fisette <ribosome@gentoo.org> emboss-3.0.0-r1.ebuild: |
| Block old versions of pscan to avoid file collisions (see bug #116236). |
| |
| 23 Jan 2006; Olivier Fisette <ribosome@gentoo.org> +files/README.Gentoo: |
| Added missing README file (fixes bug #120071). |
| |
| *emboss-3.0.0-r1 (21 Jan 2006) |
| |
| 21 Jan 2006; Olivier Fisette <ribosome@gentoo.org> |
| +emboss-3.0.0-r1.ebuild: |
| Install codons and restriction enzyme equivalence files in alternative |
| directories. This avoids file collisions on case insensitive filesystems |
| (see bug #115446), allows the installation of an updated enzyme prototypes |
| file that will give more consistent results (see bug #118832). |
| |
| 14 Dec 2005; Donnie Berkholz <spyderous@gentoo.org>; emboss-3.0.0.ebuild: |
| Add modular X dependencies. |
| |
| 19 Nov 2005; Simon Stelling <blubb@gentoo.org> emboss-3.0.0.ebuild: |
| stable on amd64 |
| |
| 04 Oct 2005; Olivier Fisette <ribosome@gentoo.org> -emboss-2.10.0.ebuild: |
| Removed obsolete version. |
| |
| 03 Oct 2005; Olivier Fisette <ribosome@gentoo.org> emboss-3.0.0.ebuild: |
| Stable on ppc-macos (with j4rg0n's permission, bug #102420). |
| |
| 02 Oct 2005; Michael Hanselmann <hansmi@gentoo.org> emboss-3.0.0.ebuild: |
| Stable on ppc. |
| |
| 24 Sep 2005; Markus Rothe <corsair@gentoo.org> emboss-3.0.0.ebuild: |
| Stable on ppc64 |
| |
| 21 Sep 2005; Olivier Fisette <ribosome@gentoo.org> emboss-3.0.0.ebuild: |
| Added to x86. |
| |
| 04 Sep 2005; Simon Stelling <blubb@gentoo.org> emboss-3.0.0.ebuild: |
| added ~amd64 keyword |
| |
| 13 Aug 2005; Olivier Fisette <ribosome@gentoo.org> emboss-3.0.0.ebuild, |
| emboss-2.10.0.ebuild: |
| Fixed Prosite dependency. |
| |
| *emboss-3.0.0 (06 Aug 2005) |
| |
| 06 Aug 2005; Olivier Fisette <ribosome@gentoo.org> +emboss-3.0.0.ebuild: |
| New version. |
| |
| 28 Jul 2005; Olivier Fisette <ribosome@gentoo.org> -emboss-2.9.0.ebuild: |
| Removed old version. |
| |
| 25 Jun 2005; Lina Pezzella <j4rg0n@gentoo.org> emboss-2.10.0.ebuild: |
| Stable ppc-macos |
| |
| 24 Jun 2005; Joseph Jezak <josejx@gentoo.org> emboss-2.10.0.ebuild: |
| Marked ppc stable for bug #96819. |
| |
| 19 Jun 2005; Markus Rothe <corsair@gentoo.org> emboss-2.10.0.ebuild: |
| Stable on ppc64 |
| |
| 13 May 2005; Olivier Fisette <ribosome@gentoo.org> emboss-2.10.0.ebuild: |
| Added to x86. |
| |
| 02 May 2005; Omkhar Arasaratnam <omkhar@gentoo.org> emboss-2.10.0.ebuild: |
| Added ~ppc64 |
| |
| 02 May 2005; Michael Hanselmann <hansmi@gentoo.org> emboss-2.9.0.ebuild: |
| Stable on ppc. |
| |
| *emboss-2.10.0 (22 Mar 2005) |
| |
| 22 Mar 2005; Olivier Fisette <ribosome@gentoo.org> +emboss-2.10.0.ebuild: |
| New version. |
| |
| 22 Feb 2005; Olivier Fisette <ribosome@gentoo.org> emboss-2.9.0.ebuild: |
| Added support for minimal build. |
| |
| 09 Feb 2005; Lina Pezzella <j4rg0n@gentoo.org> emboss-2.9.0.ebuild: |
| Stable ppc-macos |
| |
| 30 Jan 2005; Olivier Fisette <ribosome@gentoo.org> emboss-2.9.0.ebuild: |
| Ebuild cleanup. |
| |
| 01 Jan 2005; Lina Pezzella <j4rg0n@gentoo.org> emboss-2.9.0.ebuild: |
| Unstable ppc-macos. |
| |
| *emboss-2.9.0 (23 Dec 2004) |
| |
| 23 Dec 2004; Olivier Fisette <ribosome@gentoo.org> +metadata.xml, |
| +files/22emboss-r1, +emboss-2.9.0.ebuild: |
| Moved from app-sci/emboss to sci-biology/emboss. |
| |
| 31 Oct 2004; Olivier Fisette <ribosome@gentoo.org> emboss-2.9.0.ebuild, |
| -emboss-2.8.0-r3.ebuild: |
| Removed old version. Added 2.9.0 to x86. |
| |
| 10 Aug 2004; Olivier Fisette <ribosome@gentoo.org> |
| emboss-2.8.0-r3.ebuild: |
| Added to x86. |
| emboss-2.8.0-r2.ebuild: |
| Removed obsolete ebuild. |
| |
| 21 Jul 2004; David Holm <dholm@gentoo.org> emboss-2.9.0.ebuild: |
| Added to ~ppc. |
| |
| 20 Jul 2004; Olivier Fisette <ribosome@gentoo.org> |
| emboss-2.8.0-r3.ebuild, emboss-2.9.0.ebuild: |
| Removed icc support since no patching is needed. |
| |
| 19 Jul 2004; Olivier Fisette <ribosome@gentoo.org> emboss-2.9.0.ebuild: |
| Version bump. Changed the configuration and install steps a bit to |
| reflect the fact that header files are now installed automatically. |
| |
| 14 Jul 2004; Olivier Fisette <ribosome@gentoo.org> |
| emboss-2.8.0-r3.ebuild: Modified configuration step to make the X and png |
| USE flags independent; Added support for icc; Added primer3 and clustalw |
| to the dependencies since some EMBOSS programs won't work without them; |
| Added support for the biological databases aaindex, cutg, prints, prosite, |
| rebase and transfac, which are needed for many EMBOSS programs (the databases |
| are PDEPENDencies since they all must be indexed with an EMBOSS program before |
| use) (this database support is optional); Added header files installation for |
| EMBOSS development. |
| emboss-2.8.0-r2.ebuild: Added to x86. |
| emboss-2.8.0-r1.ebuild, emboss-2.8.0.ebuild, emboss-2.7.1.ebuild: Removed files. |
| metadata.xml: Added long description; Set myself as maintainer. |
| |
| 02 Jun 2004; Aron Griffis <agriffis@gentoo.org> emboss-2.8.0-r1.ebuild, |
| emboss-2.8.0-r2.ebuild: |
| Fix use invocation |
| |
| 12 May 2004; David Holm <dholm@gentoo.org> emboss-2.8.0-r2.ebuild: |
| Added to ~ppc. |
| |
| *emboss-2.8.0-r2 (11 May 2004) |
| |
| 11 May 2004; Patrick Kursawe <phosphan@gentoo.org> emboss-2.8.0-r2.ebuild, |
| files/22emboss-r1: |
| Adjusted value of PLPLOT_LIB, see bug #50176 |
| |
| *emboss-2.8.0-r1 (30 Jan 2004) |
| |
| 30 Jan 2004; Stephen Diener <sediener@gentoo.org> emboss-2.8.0-r1.ebuild: |
| Modified to use X and png properly for servers |
| |
| 28 Jan 2004; Stephen Diener <sediener@gentoo.org> emboss-2.8.0.ebuild: |
| Modified 2.8.0 ebuild to require X not just USE it. |
| |
| *emboss-2.8.0 (13 Dec 2003) |
| |
| 13 Dec 2003; Stephen Diener <sediener@gentoo.org> emboss-2.7.1.ebuild, |
| emboss-2.8.0.ebuild: |
| Version bump... |
| |
| 20 Oct 2003; George Shapovalov <george@gentoo.org> metdata.xml : |
| added metadata.xml, marked ebuild stable |
| |
| *emboss-2.7.1 (03 Sep 2003) |
| |
| 03 Sep 2003; <sediener@gentoo.org> emboss-2.7.1.ebuild: |
| Initial ebuild |
