| # Copyright 1999-2015 Gentoo Foundation |
| # Distributed under the terms of the GNU General Public License v2 |
| # $Id$ |
| |
| EAPI=5 |
| |
| inherit eutils flag-o-matic toolchain-funcs |
| |
| DESCRIPTION="FASTA is a DNA and Protein sequence alignment software package" |
| HOMEPAGE="http://fasta.bioch.virginia.edu/fasta_www2/fasta_down.shtml" |
| SRC_URI="http://faculty.virginia.edu/wrpearson/${PN}/${PN}36/${P}.tar.gz" |
| |
| LICENSE="fasta" |
| SLOT="0" |
| KEYWORDS="~amd64 ~ppc ~x86 ~amd64-linux ~x86-linux ~x64-macos ~x86-macos" |
| IUSE="debug cpu_flags_x86_sse2 test" |
| |
| DEPEND="test? ( app-shells/tcsh )" |
| RDEPEND="" |
| |
| src_prepare() { |
| CC_ALT= |
| CFLAGS_ALT= |
| ALT= |
| |
| use debug && append-flags -DDEBUG |
| |
| if [[ $(tc-getCC) == *icc* ]]; then |
| CC_ALT=icc |
| ALT="${ALT}_icc" |
| else |
| CC_ALT=$(tc-getCC) |
| use x86 && ALT="32" |
| use amd64 && ALT="64" |
| fi |
| |
| if use cpu_flags_x86_sse2 ; then |
| ALT="${ALT}_sse2" |
| append-flags -msse2 |
| [[ $(tc-getCC) == *icc* ]] || append-flags -ffast-math |
| fi |
| |
| export CC_ALT="${CC_ALT}" |
| export ALT="${ALT}" |
| |
| epatch "${FILESDIR}"/${P}-ldflags.patch |
| |
| sed \ |
| -e 's:-ffast-math::g' \ |
| -i make/Makefile* || die |
| |
| } |
| |
| src_compile() { |
| cd src || die |
| emake -f ../make/Makefile.linux${ALT} CC="${CC_ALT} ${CFLAGS}" HFLAGS="${LDFLAGS} -o" all |
| } |
| |
| src_test() { |
| cd test || die |
| FASTLIBS="../conf" bash test.sh || die |
| } |
| |
| src_install() { |
| local bin |
| dobin bin/* |
| |
| pushd bin > /dev/null || die |
| for bin in *36; do |
| dosym ${bin} /usr/bin/${bin%36} || die |
| done |
| popd |
| |
| insinto /usr/share/${PN} |
| doins -r conf/* data seq |
| |
| doman doc/{prss3.1,fasta36.1,fasts3.1,fastf3.1,ps_lav.1,map_db.1} |
| dodoc FASTA_LIST README doc/{README.versions,readme*,fasta*,changes*} |
| } |
