| # Copyright 1999-2015 Gentoo Foundation |
| # Distributed under the terms of the GNU General Public License v2 |
| # $Id$ |
| |
| EAPI=5 |
| |
| inherit eutils flag-o-matic fortran-2 toolchain-funcs |
| |
| DESCRIPTION="A suite of algorithms for ecological bioinformatics" |
| HOMEPAGE="http://www.mothur.org/" |
| SRC_URI="http://www.mothur.org/w/images/c/cb/Mothur.${PV}.zip -> ${P}.zip" |
| |
| LICENSE="GPL-3" |
| SLOT="0" |
| IUSE="mpi +readline" |
| KEYWORDS="amd64 x86" |
| |
| RDEPEND=" |
| sci-biology/uchime |
| mpi? ( virtual/mpi )" |
| DEPEND="${RDEPEND} |
| app-arch/unzip" |
| |
| S=${WORKDIR}/Mothur.source |
| |
| pkg_setup() { |
| fortran-2_pkg_setup |
| use mpi && export CXX=mpicxx || export CXX=$(tc-getCXX) |
| use amd64 && append-cppflags -DBIT_VERSION |
| } |
| |
| src_prepare() { |
| epatch \ |
| "${FILESDIR}"/${P}-makefile.patch \ |
| "${FILESDIR}"/${P}-overflows.patch |
| } |
| |
| src_compile() { |
| emake USEMPI=$(usex mpi) USEREADLINE=$(usex readline) |
| } |
| |
| src_install() { |
| dobin ${PN} |
| } |
