| # Copyright 1999-2016 Gentoo Foundation |
| # Distributed under the terms of the GNU General Public License v2 |
| # $Id$ |
| |
| EAPI="5" |
| |
| inherit perl-module git-2 |
| |
| SUBPROJECTS="+db +network +run" |
| |
| DESCRIPTION="Perl tools for bioinformatics - Core modules" |
| HOMEPAGE="http://www.bioperl.org/" |
| SRC_URI="" |
| EGIT_REPO_URI="git://github.com/${PN}/${PN}-live.git |
| https://github.com/${PN}/${PN}-live.git" |
| |
| LICENSE="Artistic GPL-2" |
| SLOT="0" |
| KEYWORDS="" |
| IUSE="-minimal graphviz ${SUBPROJECTS}" |
| |
| CDEPEND=" |
| dev-perl/Data-Stag |
| dev-perl/libwww-perl |
| !minimal? ( |
| dev-perl/Ace |
| dev-perl/Bio-ASN1-EntrezGene |
| dev-perl/Spreadsheet-ParseExcel |
| dev-perl/Spreadsheet-WriteExcel |
| >=dev-perl/XML-SAX-0.15 |
| dev-perl/Graph |
| dev-perl/SOAP-Lite |
| dev-perl/Array-Compare |
| dev-perl/SVG |
| dev-perl/XML-Simple |
| dev-perl/XML-Parser |
| dev-perl/XML-Twig |
| >=dev-perl/HTML-Parser-3.60 |
| >=dev-perl/XML-Writer-0.4 |
| dev-perl/Clone |
| dev-perl/XML-DOM |
| dev-perl/Set-Scalar |
| dev-perl/XML-XPath |
| dev-perl/XML-DOM-XPath |
| dev-perl/Algorithm-Munkres |
| dev-perl/Data-Stag |
| dev-perl/Math-Random |
| dev-perl/PostScript |
| dev-perl/Convert-Binary-C |
| dev-perl/SVG-Graph |
| ) |
| graphviz? ( dev-perl/GraphViz )" |
| DEPEND="dev-perl/Module-Build |
| ${CDEPEND}" |
| RDEPEND="${CDEPEND}" |
| PDEPEND="!minimal? ( dev-perl/Bio-ASN1-EntrezGene ) |
| db? ( >=sci-biology/bioperl-db-${PV} ) |
| network? ( >=sci-biology/bioperl-network-${PV} ) |
| run? ( >=sci-biology/bioperl-run-${PV} )" |
| |
| S="${WORKDIR}/BioPerl-${PV}" |
| |
| src_configure() { |
| sed -i -e '/add_post_install_script.*symlink_script.pl/d' \ |
| -e "/'CPAN' *=> *1.81/d" "${S}/Build.PL" \ |
| -e "/'ExtUtils::Manifest' *=> *'1.52'/d" "${S}/Build.PL" \ |
| || die |
| if use minimal && use graphviz; then die "USE flags minimal and graphviz cannot be used together"; fi |
| perl-module_src_configure |
| } |
| |
| src_install() { |
| mydoc="AUTHORS BUGS FAQ" |
| perl-module_src_install |
| } |
