| # Copyright 1999-2012 Gentoo Foundation |
| # Distributed under the terms of the GNU General Public License v2 |
| # $Id$ |
| |
| EAPI=4 |
| |
| MY_PV=${PV//./-} |
| |
| DESCRIPTION="A Genomic Mapping and Alignment Program for mRNA and EST Sequences" |
| HOMEPAGE="http://research-pub.gene.com/gmap/" |
| SRC_URI="http://research-pub.gene.com/gmap/src/gmap-gsnap-${MY_PV}.tar.gz" |
| |
| LICENSE="gmap" |
| SLOT="0" |
| IUSE="+samtools +goby" |
| KEYWORDS="~amd64 ~x86" |
| |
| DEPEND="samtools? ( sci-biology/samtools ) |
| goby? ( sci-biology/goby-cpp )" |
| RDEPEND="${DEPEND}" |
| |
| S="${WORKDIR}/gmap-${MY_PV}" |
| |
| src_configure() { |
| econf $(use_with samtools) \ |
| $(use_with goby goby /usr) |
| } |
| |
| src_install() { |
| einstall || die |
| dodoc AUTHORS ChangeLog README |
| } |
| |
| src_test() { |
| emake check || die |
| } |
