| # Copyright 1999-2009 Gentoo Foundation |
| # Distributed under the terms of the GNU General Public License v2 |
| # $Header: /var/cvsroot/gentoo-x86/sci-biology/gibbs/gibbs-3.1.ebuild,v 1.5 2009/12/28 23:49:26 maekke Exp $ |
| |
| EAPI="2" |
| |
| inherit autotools |
| |
| DESCRIPTION="The Gibbs Motif Sampler identifies motifs, conserved regions, in DNA or protein sequences" |
| HOMEPAGE="http://bayesweb.wadsworth.org/gibbs/gibbs.html" |
| SRC_URI="mirror://gentoo/gibbs-${PV}.tar.gz" |
| |
| LICENSE="GPL-2" |
| SLOT="0" |
| IUSE="mpi" |
| KEYWORDS="amd64 x86" |
| |
| DEPEND="mpi? ( virtual/mpi |
| sys-cluster/mpe2 )" |
| RDEPEND="${DEPEND}" |
| |
| src_prepare() { |
| sed -i -e 's/CFLAGS="$OPTFLAGS/CFLAGS="$CFLAGS $OPTFLAGS/' \ |
| -e 's/-Werror//' configure.in || die |
| eautoreconf |
| } |
| |
| src_configure() { |
| if use mpi; then export CC=mpicc; fi |
| econf $(use_enable mpi) || die |
| } |
| |
| src_install() { |
| emake DESTDIR="${D}" install || die "install failed" |
| exeinto /usr/share/${PN} |
| doexe *.pl |
| dodoc README ChangeLog |
| } |
| |
| pkg_postinst() { |
| einfo "Supplementary Perl scripts for Gibbs have been installed into /usr/share/${PN}." |
| einfo "These scripts require installation of sci-biology/bioperl." |
| } |
