googleapis/genomics/v1/annotations.pb.go

// Code generated by protoc-gen-go. DO NOT EDIT.
// source: google/genomics/v1/annotations.proto

package genomics // import "google.golang.org/genproto/googleapis/genomics/v1"

import proto "github.com/golang/protobuf/proto"
import fmt "fmt"
import math "math"
import empty "github.com/golang/protobuf/ptypes/empty"
import _struct "github.com/golang/protobuf/ptypes/struct"
import wrappers "github.com/golang/protobuf/ptypes/wrappers"
import _ "google.golang.org/genproto/googleapis/api/annotations"
import status "google.golang.org/genproto/googleapis/rpc/status"
import field_mask "google.golang.org/genproto/protobuf/field_mask"

import (
	context "golang.org/x/net/context"
	grpc "google.golang.org/grpc"
)

// Reference imports to suppress errors if they are not otherwise used.
var _ = proto.Marshal
var _ = fmt.Errorf
var _ = math.Inf

// This is a compile-time assertion to ensure that this generated file
// is compatible with the proto package it is being compiled against.
// A compilation error at this line likely means your copy of the
// proto package needs to be updated.
const _ = proto.ProtoPackageIsVersion2 // please upgrade the proto package

// When an [Annotation][google.genomics.v1.Annotation] or
// [AnnotationSet][google.genomics.v1.AnnotationSet] is created, if `type` is
// not specified it will be set to `GENERIC`.
type AnnotationType int32

const (
	AnnotationType_ANNOTATION_TYPE_UNSPECIFIED AnnotationType = 0
	// A `GENERIC` annotation type should be used when no other annotation
	// type will suffice. This represents an untyped annotation of the reference
	// genome.
	AnnotationType_GENERIC AnnotationType = 1
	// A `VARIANT` annotation type.
	AnnotationType_VARIANT AnnotationType = 2
	// A `GENE` annotation type represents the existence of a gene at the
	// associated reference coordinates. The start coordinate is typically the
	// gene's transcription start site and the end is typically the end of the
	// gene's last exon.
	AnnotationType_GENE AnnotationType = 3
	// A `TRANSCRIPT` annotation type represents the assertion that a
	// particular region of the reference genome may be transcribed as RNA.
	AnnotationType_TRANSCRIPT AnnotationType = 4
)

var AnnotationType_name = map[int32]string{
	0: "ANNOTATION_TYPE_UNSPECIFIED",
	1: "GENERIC",
	2: "VARIANT",
	3: "GENE",
	4: "TRANSCRIPT",
}
var AnnotationType_value = map[string]int32{
	"ANNOTATION_TYPE_UNSPECIFIED": 0,
	"GENERIC":                     1,
	"VARIANT":                     2,
	"GENE":                        3,
	"TRANSCRIPT":                  4,
}

func (x AnnotationType) String() string {
	return proto.EnumName(AnnotationType_name, int32(x))
}
func (AnnotationType) EnumDescriptor() ([]byte, []int) {
	return fileDescriptor_annotations_22f61783ae14922a, []int{0}
}

type VariantAnnotation_Type int32

const (
	VariantAnnotation_TYPE_UNSPECIFIED VariantAnnotation_Type = 0
	// `TYPE_OTHER` should be used when no other Type will suffice.
	// Further explanation of the variant type may be included in the
	// [info][google.genomics.v1.Annotation.info] field.
	VariantAnnotation_TYPE_OTHER VariantAnnotation_Type = 1
	// `INSERTION` indicates an insertion.
	VariantAnnotation_INSERTION VariantAnnotation_Type = 2
	// `DELETION` indicates a deletion.
	VariantAnnotation_DELETION VariantAnnotation_Type = 3
	// `SUBSTITUTION` indicates a block substitution of
	// two or more nucleotides.
	VariantAnnotation_SUBSTITUTION VariantAnnotation_Type = 4
	// `SNP` indicates a single nucleotide polymorphism.
	VariantAnnotation_SNP VariantAnnotation_Type = 5
	// `STRUCTURAL` indicates a large structural variant,
	// including chromosomal fusions, inversions, etc.
	VariantAnnotation_STRUCTURAL VariantAnnotation_Type = 6
	// `CNV` indicates a variation in copy number.
	VariantAnnotation_CNV VariantAnnotation_Type = 7
)

var VariantAnnotation_Type_name = map[int32]string{
	0: "TYPE_UNSPECIFIED",
	1: "TYPE_OTHER",
	2: "INSERTION",
	3: "DELETION",
	4: "SUBSTITUTION",
	5: "SNP",
	6: "STRUCTURAL",
	7: "CNV",
}
var VariantAnnotation_Type_value = map[string]int32{
	"TYPE_UNSPECIFIED": 0,
	"TYPE_OTHER":       1,
	"INSERTION":        2,
	"DELETION":         3,
	"SUBSTITUTION":     4,
	"SNP":              5,
	"STRUCTURAL":       6,
	"CNV":              7,
}

func (x VariantAnnotation_Type) String() string {
	return proto.EnumName(VariantAnnotation_Type_name, int32(x))
}
func (VariantAnnotation_Type) EnumDescriptor() ([]byte, []int) {
	return fileDescriptor_annotations_22f61783ae14922a, []int{2, 0}
}

type VariantAnnotation_Effect int32

const (
	VariantAnnotation_EFFECT_UNSPECIFIED VariantAnnotation_Effect = 0
	// `EFFECT_OTHER` should be used when no other Effect
	// will suffice.
	VariantAnnotation_EFFECT_OTHER VariantAnnotation_Effect = 1
	// `FRAMESHIFT` indicates a mutation in which the insertion or
	// deletion of nucleotides resulted in a frameshift change.
	VariantAnnotation_FRAMESHIFT VariantAnnotation_Effect = 2
	// `FRAME_PRESERVING_INDEL` indicates a mutation in which a
	// multiple of three nucleotides has been inserted or deleted, resulting
	// in no change to the reading frame of the coding sequence.
	VariantAnnotation_FRAME_PRESERVING_INDEL VariantAnnotation_Effect = 3
	// `SYNONYMOUS_SNP` indicates a single nucleotide polymorphism
	// mutation that results in no amino acid change.
	VariantAnnotation_SYNONYMOUS_SNP VariantAnnotation_Effect = 4
	// `NONSYNONYMOUS_SNP` indicates a single nucleotide
	// polymorphism mutation that results in an amino acid change.
	VariantAnnotation_NONSYNONYMOUS_SNP VariantAnnotation_Effect = 5
	// `STOP_GAIN` indicates a mutation that leads to the creation
	// of a stop codon at the variant site. Frameshift mutations creating
	// downstream stop codons do not count as `STOP_GAIN`.
	VariantAnnotation_STOP_GAIN VariantAnnotation_Effect = 6
	// `STOP_LOSS` indicates a mutation that eliminates a
	// stop codon at the variant site.
	VariantAnnotation_STOP_LOSS VariantAnnotation_Effect = 7
	// `SPLICE_SITE_DISRUPTION` indicates that this variant is
	// found in a splice site for the associated transcript, and alters the
	// normal splicing pattern.
	VariantAnnotation_SPLICE_SITE_DISRUPTION VariantAnnotation_Effect = 8
)

var VariantAnnotation_Effect_name = map[int32]string{
	0: "EFFECT_UNSPECIFIED",
	1: "EFFECT_OTHER",
	2: "FRAMESHIFT",
	3: "FRAME_PRESERVING_INDEL",
	4: "SYNONYMOUS_SNP",
	5: "NONSYNONYMOUS_SNP",
	6: "STOP_GAIN",
	7: "STOP_LOSS",
	8: "SPLICE_SITE_DISRUPTION",
}
var VariantAnnotation_Effect_value = map[string]int32{
	"EFFECT_UNSPECIFIED":     0,
	"EFFECT_OTHER":           1,
	"FRAMESHIFT":             2,
	"FRAME_PRESERVING_INDEL": 3,
	"SYNONYMOUS_SNP":         4,
	"NONSYNONYMOUS_SNP":      5,
	"STOP_GAIN":              6,
	"STOP_LOSS":              7,
	"SPLICE_SITE_DISRUPTION": 8,
}

func (x VariantAnnotation_Effect) String() string {
	return proto.EnumName(VariantAnnotation_Effect_name, int32(x))
}
func (VariantAnnotation_Effect) EnumDescriptor() ([]byte, []int) {
	return fileDescriptor_annotations_22f61783ae14922a, []int{2, 1}
}

type VariantAnnotation_ClinicalSignificance int32

const (
	VariantAnnotation_CLINICAL_SIGNIFICANCE_UNSPECIFIED VariantAnnotation_ClinicalSignificance = 0
	// `OTHER` should be used when no other clinical significance
	// value will suffice.
	VariantAnnotation_CLINICAL_SIGNIFICANCE_OTHER VariantAnnotation_ClinicalSignificance = 1
	VariantAnnotation_UNCERTAIN                   VariantAnnotation_ClinicalSignificance = 2
	VariantAnnotation_BENIGN                      VariantAnnotation_ClinicalSignificance = 3
	VariantAnnotation_LIKELY_BENIGN               VariantAnnotation_ClinicalSignificance = 4
	VariantAnnotation_LIKELY_PATHOGENIC           VariantAnnotation_ClinicalSignificance = 5
	VariantAnnotation_PATHOGENIC                  VariantAnnotation_ClinicalSignificance = 6
	VariantAnnotation_DRUG_RESPONSE               VariantAnnotation_ClinicalSignificance = 7
	VariantAnnotation_HISTOCOMPATIBILITY          VariantAnnotation_ClinicalSignificance = 8
	VariantAnnotation_CONFERS_SENSITIVITY         VariantAnnotation_ClinicalSignificance = 9
	VariantAnnotation_RISK_FACTOR                 VariantAnnotation_ClinicalSignificance = 10
	VariantAnnotation_ASSOCIATION                 VariantAnnotation_ClinicalSignificance = 11
	VariantAnnotation_PROTECTIVE                  VariantAnnotation_ClinicalSignificance = 12
	// `MULTIPLE_REPORTED` should be used when multiple clinical
	// signficances are reported for a variant. The original clinical
	// significance values may be provided in the `info` field.
	VariantAnnotation_MULTIPLE_REPORTED VariantAnnotation_ClinicalSignificance = 13
)

var VariantAnnotation_ClinicalSignificance_name = map[int32]string{
	0:  "CLINICAL_SIGNIFICANCE_UNSPECIFIED",
	1:  "CLINICAL_SIGNIFICANCE_OTHER",
	2:  "UNCERTAIN",
	3:  "BENIGN",
	4:  "LIKELY_BENIGN",
	5:  "LIKELY_PATHOGENIC",
	6:  "PATHOGENIC",
	7:  "DRUG_RESPONSE",
	8:  "HISTOCOMPATIBILITY",
	9:  "CONFERS_SENSITIVITY",
	10: "RISK_FACTOR",
	11: "ASSOCIATION",
	12: "PROTECTIVE",
	13: "MULTIPLE_REPORTED",
}
var VariantAnnotation_ClinicalSignificance_value = map[string]int32{
	"CLINICAL_SIGNIFICANCE_UNSPECIFIED": 0,
	"CLINICAL_SIGNIFICANCE_OTHER":       1,
	"UNCERTAIN":                         2,
	"BENIGN":                            3,
	"LIKELY_BENIGN":                     4,
	"LIKELY_PATHOGENIC":                 5,
	"PATHOGENIC":                        6,
	"DRUG_RESPONSE":                     7,
	"HISTOCOMPATIBILITY":                8,
	"CONFERS_SENSITIVITY":               9,
	"RISK_FACTOR":                       10,
	"ASSOCIATION":                       11,
	"PROTECTIVE":                        12,
	"MULTIPLE_REPORTED":                 13,
}

func (x VariantAnnotation_ClinicalSignificance) String() string {
	return proto.EnumName(VariantAnnotation_ClinicalSignificance_name, int32(x))
}
func (VariantAnnotation_ClinicalSignificance) EnumDescriptor() ([]byte, []int) {
	return fileDescriptor_annotations_22f61783ae14922a, []int{2, 2}
}

// An annotation set is a logical grouping of annotations that share consistent
// type information and provenance. Examples of annotation sets include 'all
// genes from refseq', and 'all variant annotations from ClinVar'.
type AnnotationSet struct {
	// The server-generated annotation set ID, unique across all annotation sets.
	Id string `protobuf:"bytes,1,opt,name=id,proto3" json:"id,omitempty"`
	// The dataset to which this annotation set belongs.
	DatasetId string `protobuf:"bytes,2,opt,name=dataset_id,json=datasetId,proto3" json:"dataset_id,omitempty"`
	// The ID of the reference set that defines the coordinate space for this
	// set's annotations.
	ReferenceSetId string `protobuf:"bytes,3,opt,name=reference_set_id,json=referenceSetId,proto3" json:"reference_set_id,omitempty"`
	// The display name for this annotation set.
	Name string `protobuf:"bytes,4,opt,name=name,proto3" json:"name,omitempty"`
	// The source URI describing the file from which this annotation set was
	// generated, if any.
	SourceUri string `protobuf:"bytes,5,opt,name=source_uri,json=sourceUri,proto3" json:"source_uri,omitempty"`
	// The type of annotations contained within this set.
	Type AnnotationType `protobuf:"varint,6,opt,name=type,proto3,enum=google.genomics.v1.AnnotationType" json:"type,omitempty"`
	// A map of additional read alignment information. This must be of the form
	// map<string, string[]> (string key mapping to a list of string values).
	Info                 map[string]*_struct.ListValue `protobuf:"bytes,17,rep,name=info,proto3" json:"info,omitempty" protobuf_key:"bytes,1,opt,name=key,proto3" protobuf_val:"bytes,2,opt,name=value,proto3"`
	XXX_NoUnkeyedLiteral struct{}                      `json:"-"`
	XXX_unrecognized     []byte                        `json:"-"`
	XXX_sizecache        int32                         `json:"-"`
}

func (m *AnnotationSet) Reset()         { *m = AnnotationSet{} }
func (m *AnnotationSet) String() string { return proto.CompactTextString(m) }
func (*AnnotationSet) ProtoMessage()    {}
func (*AnnotationSet) Descriptor() ([]byte, []int) {
	return fileDescriptor_annotations_22f61783ae14922a, []int{0}
}
func (m *AnnotationSet) XXX_Unmarshal(b []byte) error {
	return xxx_messageInfo_AnnotationSet.Unmarshal(m, b)
}
func (m *AnnotationSet) XXX_Marshal(b []byte, deterministic bool) ([]byte, error) {
	return xxx_messageInfo_AnnotationSet.Marshal(b, m, deterministic)
}
func (dst *AnnotationSet) XXX_Merge(src proto.Message) {
	xxx_messageInfo_AnnotationSet.Merge(dst, src)
}
func (m *AnnotationSet) XXX_Size() int {
	return xxx_messageInfo_AnnotationSet.Size(m)
}
func (m *AnnotationSet) XXX_DiscardUnknown() {
	xxx_messageInfo_AnnotationSet.DiscardUnknown(m)
}

var xxx_messageInfo_AnnotationSet proto.InternalMessageInfo

func (m *AnnotationSet) GetId() string {
	if m != nil {
		return m.Id
	}
	return ""
}

func (m *AnnotationSet) GetDatasetId() string {
	if m != nil {
		return m.DatasetId
	}
	return ""
}

func (m *AnnotationSet) GetReferenceSetId() string {
	if m != nil {
		return m.ReferenceSetId
	}
	return ""
}

func (m *AnnotationSet) GetName() string {
	if m != nil {
		return m.Name
	}
	return ""
}

func (m *AnnotationSet) GetSourceUri() string {
	if m != nil {
		return m.SourceUri
	}
	return ""
}

func (m *AnnotationSet) GetType() AnnotationType {
	if m != nil {
		return m.Type
	}
	return AnnotationType_ANNOTATION_TYPE_UNSPECIFIED
}

func (m *AnnotationSet) GetInfo() map[string]*_struct.ListValue {
	if m != nil {
		return m.Info
	}
	return nil
}

// An annotation describes a region of reference genome. The value of an
// annotation may be one of several canonical types, supplemented by arbitrary
// info tags. An annotation is not inherently associated with a specific
// sample or individual (though a client could choose to use annotations in
// this way). Example canonical annotation types are `GENE` and
// `VARIANT`.
type Annotation struct {
	// The server-generated annotation ID, unique across all annotations.
	Id string `protobuf:"bytes,1,opt,name=id,proto3" json:"id,omitempty"`
	// The annotation set to which this annotation belongs.
	AnnotationSetId string `protobuf:"bytes,2,opt,name=annotation_set_id,json=annotationSetId,proto3" json:"annotation_set_id,omitempty"`
	// The display name of this annotation.
	Name string `protobuf:"bytes,3,opt,name=name,proto3" json:"name,omitempty"`
	// The ID of the Google Genomics reference associated with this range.
	ReferenceId string `protobuf:"bytes,4,opt,name=reference_id,json=referenceId,proto3" json:"reference_id,omitempty"`
	// The display name corresponding to the reference specified by
	// `referenceId`, for example `chr1`, `1`, or `chrX`.
	ReferenceName string `protobuf:"bytes,5,opt,name=reference_name,json=referenceName,proto3" json:"reference_name,omitempty"`
	// The start position of the range on the reference, 0-based inclusive.
	Start int64 `protobuf:"varint,6,opt,name=start,proto3" json:"start,omitempty"`
	// The end position of the range on the reference, 0-based exclusive.
	End int64 `protobuf:"varint,7,opt,name=end,proto3" json:"end,omitempty"`
	// Whether this range refers to the reverse strand, as opposed to the forward
	// strand. Note that regardless of this field, the start/end position of the
	// range always refer to the forward strand.
	ReverseStrand bool `protobuf:"varint,8,opt,name=reverse_strand,json=reverseStrand,proto3" json:"reverse_strand,omitempty"`
	// The data type for this annotation. Must match the containing annotation
	// set's type.
	Type AnnotationType `protobuf:"varint,9,opt,name=type,proto3,enum=google.genomics.v1.AnnotationType" json:"type,omitempty"`
	// Types that are valid to be assigned to Value:
	//	*Annotation_Variant
	//	*Annotation_Transcript
	Value isAnnotation_Value `protobuf_oneof:"value"`
	// A map of additional read alignment information. This must be of the form
	// map<string, string[]> (string key mapping to a list of string values).
	Info                 map[string]*_struct.ListValue `protobuf:"bytes,12,rep,name=info,proto3" json:"info,omitempty" protobuf_key:"bytes,1,opt,name=key,proto3" protobuf_val:"bytes,2,opt,name=value,proto3"`
	XXX_NoUnkeyedLiteral struct{}                      `json:"-"`
	XXX_unrecognized     []byte                        `json:"-"`
	XXX_sizecache        int32                         `json:"-"`
}

func (m *Annotation) Reset()         { *m = Annotation{} }
func (m *Annotation) String() string { return proto.CompactTextString(m) }
func (*Annotation) ProtoMessage()    {}
func (*Annotation) Descriptor() ([]byte, []int) {
	return fileDescriptor_annotations_22f61783ae14922a, []int{1}
}
func (m *Annotation) XXX_Unmarshal(b []byte) error {
	return xxx_messageInfo_Annotation.Unmarshal(m, b)
}
func (m *Annotation) XXX_Marshal(b []byte, deterministic bool) ([]byte, error) {
	return xxx_messageInfo_Annotation.Marshal(b, m, deterministic)
}
func (dst *Annotation) XXX_Merge(src proto.Message) {
	xxx_messageInfo_Annotation.Merge(dst, src)
}
func (m *Annotation) XXX_Size() int {
	return xxx_messageInfo_Annotation.Size(m)
}
func (m *Annotation) XXX_DiscardUnknown() {
	xxx_messageInfo_Annotation.DiscardUnknown(m)
}

var xxx_messageInfo_Annotation proto.InternalMessageInfo

func (m *Annotation) GetId() string {
	if m != nil {
		return m.Id
	}
	return ""
}

func (m *Annotation) GetAnnotationSetId() string {
	if m != nil {
		return m.AnnotationSetId
	}
	return ""
}

func (m *Annotation) GetName() string {
	if m != nil {
		return m.Name
	}
	return ""
}

func (m *Annotation) GetReferenceId() string {
	if m != nil {
		return m.ReferenceId
	}
	return ""
}

func (m *Annotation) GetReferenceName() string {
	if m != nil {
		return m.ReferenceName
	}
	return ""
}

func (m *Annotation) GetStart() int64 {
	if m != nil {
		return m.Start
	}
	return 0
}

func (m *Annotation) GetEnd() int64 {
	if m != nil {
		return m.End
	}
	return 0
}

func (m *Annotation) GetReverseStrand() bool {
	if m != nil {
		return m.ReverseStrand
	}
	return false
}

func (m *Annotation) GetType() AnnotationType {
	if m != nil {
		return m.Type
	}
	return AnnotationType_ANNOTATION_TYPE_UNSPECIFIED
}

type isAnnotation_Value interface {
	isAnnotation_Value()
}

type Annotation_Variant struct {
	Variant *VariantAnnotation `protobuf:"bytes,10,opt,name=variant,proto3,oneof"`
}

type Annotation_Transcript struct {
	Transcript *Transcript `protobuf:"bytes,11,opt,name=transcript,proto3,oneof"`
}

func (*Annotation_Variant) isAnnotation_Value() {}

func (*Annotation_Transcript) isAnnotation_Value() {}

func (m *Annotation) GetValue() isAnnotation_Value {
	if m != nil {
		return m.Value
	}
	return nil
}

func (m *Annotation) GetVariant() *VariantAnnotation {
	if x, ok := m.GetValue().(*Annotation_Variant); ok {
		return x.Variant
	}
	return nil
}

func (m *Annotation) GetTranscript() *Transcript {
	if x, ok := m.GetValue().(*Annotation_Transcript); ok {
		return x.Transcript
	}
	return nil
}

func (m *Annotation) GetInfo() map[string]*_struct.ListValue {
	if m != nil {
		return m.Info
	}
	return nil
}

// XXX_OneofFuncs is for the internal use of the proto package.
func (*Annotation) XXX_OneofFuncs() (func(msg proto.Message, b *proto.Buffer) error, func(msg proto.Message, tag, wire int, b *proto.Buffer) (bool, error), func(msg proto.Message) (n int), []interface{}) {
	return _Annotation_OneofMarshaler, _Annotation_OneofUnmarshaler, _Annotation_OneofSizer, []interface{}{
		(*Annotation_Variant)(nil),
		(*Annotation_Transcript)(nil),
	}
}

func _Annotation_OneofMarshaler(msg proto.Message, b *proto.Buffer) error {
	m := msg.(*Annotation)
	// value
	switch x := m.Value.(type) {
	case *Annotation_Variant:
		b.EncodeVarint(10<<3 | proto.WireBytes)
		if err := b.EncodeMessage(x.Variant); err != nil {
			return err
		}
	case *Annotation_Transcript:
		b.EncodeVarint(11<<3 | proto.WireBytes)
		if err := b.EncodeMessage(x.Transcript); err != nil {
			return err
		}
	case nil:
	default:
		return fmt.Errorf("Annotation.Value has unexpected type %T", x)
	}
	return nil
}

func _Annotation_OneofUnmarshaler(msg proto.Message, tag, wire int, b *proto.Buffer) (bool, error) {
	m := msg.(*Annotation)
	switch tag {
	case 10: // value.variant
		if wire != proto.WireBytes {
			return true, proto.ErrInternalBadWireType
		}
		msg := new(VariantAnnotation)
		err := b.DecodeMessage(msg)
		m.Value = &Annotation_Variant{msg}
		return true, err
	case 11: // value.transcript
		if wire != proto.WireBytes {
			return true, proto.ErrInternalBadWireType
		}
		msg := new(Transcript)
		err := b.DecodeMessage(msg)
		m.Value = &Annotation_Transcript{msg}
		return true, err
	default:
		return false, nil
	}
}

func _Annotation_OneofSizer(msg proto.Message) (n int) {
	m := msg.(*Annotation)
	// value
	switch x := m.Value.(type) {
	case *Annotation_Variant:
		s := proto.Size(x.Variant)
		n += 1 // tag and wire
		n += proto.SizeVarint(uint64(s))
		n += s
	case *Annotation_Transcript:
		s := proto.Size(x.Transcript)
		n += 1 // tag and wire
		n += proto.SizeVarint(uint64(s))
		n += s
	case nil:
	default:
		panic(fmt.Sprintf("proto: unexpected type %T in oneof", x))
	}
	return n
}

type VariantAnnotation struct {
	// Type has been adapted from ClinVar's list of variant types.
	Type VariantAnnotation_Type `protobuf:"varint,1,opt,name=type,proto3,enum=google.genomics.v1.VariantAnnotation_Type" json:"type,omitempty"`
	// Effect of the variant on the coding sequence.
	Effect VariantAnnotation_Effect `protobuf:"varint,2,opt,name=effect,proto3,enum=google.genomics.v1.VariantAnnotation_Effect" json:"effect,omitempty"`
	// The alternate allele for this variant. If multiple alternate alleles
	// exist at this location, create a separate variant for each one, as they
	// may represent distinct conditions.
	AlternateBases string `protobuf:"bytes,3,opt,name=alternate_bases,json=alternateBases,proto3" json:"alternate_bases,omitempty"`
	// Google annotation ID of the gene affected by this variant. This should
	// be provided when the variant is created.
	GeneId string `protobuf:"bytes,4,opt,name=gene_id,json=geneId,proto3" json:"gene_id,omitempty"`
	// Google annotation IDs of the transcripts affected by this variant. These
	// should be provided when the variant is created.
	TranscriptIds []string `protobuf:"bytes,5,rep,name=transcript_ids,json=transcriptIds,proto3" json:"transcript_ids,omitempty"`
	// The set of conditions associated with this variant.
	// A condition describes the way a variant influences human health.
	Conditions []*VariantAnnotation_ClinicalCondition `protobuf:"bytes,6,rep,name=conditions,proto3" json:"conditions,omitempty"`
	// Describes the clinical significance of a variant.
	// It is adapted from the ClinVar controlled vocabulary for clinical
	// significance described at:
	// http://www.ncbi.nlm.nih.gov/clinvar/docs/clinsig/
	ClinicalSignificance VariantAnnotation_ClinicalSignificance `protobuf:"varint,7,opt,name=clinical_significance,json=clinicalSignificance,proto3,enum=google.genomics.v1.VariantAnnotation_ClinicalSignificance" json:"clinical_significance,omitempty"`
	XXX_NoUnkeyedLiteral struct{}                               `json:"-"`
	XXX_unrecognized     []byte                                 `json:"-"`
	XXX_sizecache        int32                                  `json:"-"`
}

func (m *VariantAnnotation) Reset()         { *m = VariantAnnotation{} }
func (m *VariantAnnotation) String() string { return proto.CompactTextString(m) }
func (*VariantAnnotation) ProtoMessage()    {}
func (*VariantAnnotation) Descriptor() ([]byte, []int) {
	return fileDescriptor_annotations_22f61783ae14922a, []int{2}
}
func (m *VariantAnnotation) XXX_Unmarshal(b []byte) error {
	return xxx_messageInfo_VariantAnnotation.Unmarshal(m, b)
}
func (m *VariantAnnotation) XXX_Marshal(b []byte, deterministic bool) ([]byte, error) {
	return xxx_messageInfo_VariantAnnotation.Marshal(b, m, deterministic)
}
func (dst *VariantAnnotation) XXX_Merge(src proto.Message) {
	xxx_messageInfo_VariantAnnotation.Merge(dst, src)
}
func (m *VariantAnnotation) XXX_Size() int {
	return xxx_messageInfo_VariantAnnotation.Size(m)
}
func (m *VariantAnnotation) XXX_DiscardUnknown() {
	xxx_messageInfo_VariantAnnotation.DiscardUnknown(m)
}

var xxx_messageInfo_VariantAnnotation proto.InternalMessageInfo

func (m *VariantAnnotation) GetType() VariantAnnotation_Type {
	if m != nil {
		return m.Type
	}
	return VariantAnnotation_TYPE_UNSPECIFIED
}

func (m *VariantAnnotation) GetEffect() VariantAnnotation_Effect {
	if m != nil {
		return m.Effect
	}
	return VariantAnnotation_EFFECT_UNSPECIFIED
}

func (m *VariantAnnotation) GetAlternateBases() string {
	if m != nil {
		return m.AlternateBases
	}
	return ""
}

func (m *VariantAnnotation) GetGeneId() string {
	if m != nil {
		return m.GeneId
	}
	return ""
}

func (m *VariantAnnotation) GetTranscriptIds() []string {
	if m != nil {
		return m.TranscriptIds
	}
	return nil
}

func (m *VariantAnnotation) GetConditions() []*VariantAnnotation_ClinicalCondition {
	if m != nil {
		return m.Conditions
	}
	return nil
}

func (m *VariantAnnotation) GetClinicalSignificance() VariantAnnotation_ClinicalSignificance {
	if m != nil {
		return m.ClinicalSignificance
	}
	return VariantAnnotation_CLINICAL_SIGNIFICANCE_UNSPECIFIED
}

type VariantAnnotation_ClinicalCondition struct {
	// A set of names for the condition.
	Names []string `protobuf:"bytes,1,rep,name=names,proto3" json:"names,omitempty"`
	// The set of external IDs for this condition.
	ExternalIds []*ExternalId `protobuf:"bytes,2,rep,name=external_ids,json=externalIds,proto3" json:"external_ids,omitempty"`
	// The MedGen concept id associated with this gene.
	// Search for these IDs at http://www.ncbi.nlm.nih.gov/medgen/
	ConceptId string `protobuf:"bytes,3,opt,name=concept_id,json=conceptId,proto3" json:"concept_id,omitempty"`
	// The OMIM id for this condition.
	// Search for these IDs at http://omim.org/
	OmimId               string   `protobuf:"bytes,4,opt,name=omim_id,json=omimId,proto3" json:"omim_id,omitempty"`
	XXX_NoUnkeyedLiteral struct{} `json:"-"`
	XXX_unrecognized     []byte   `json:"-"`
	XXX_sizecache        int32    `json:"-"`
}

func (m *VariantAnnotation_ClinicalCondition) Reset()         { *m = VariantAnnotation_ClinicalCondition{} }
func (m *VariantAnnotation_ClinicalCondition) String() string { return proto.CompactTextString(m) }
func (*VariantAnnotation_ClinicalCondition) ProtoMessage()    {}
func (*VariantAnnotation_ClinicalCondition) Descriptor() ([]byte, []int) {
	return fileDescriptor_annotations_22f61783ae14922a, []int{2, 0}
}
func (m *VariantAnnotation_ClinicalCondition) XXX_Unmarshal(b []byte) error {
	return xxx_messageInfo_VariantAnnotation_ClinicalCondition.Unmarshal(m, b)
}
func (m *VariantAnnotation_ClinicalCondition) XXX_Marshal(b []byte, deterministic bool) ([]byte, error) {
	return xxx_messageInfo_VariantAnnotation_ClinicalCondition.Marshal(b, m, deterministic)
}
func (dst *VariantAnnotation_ClinicalCondition) XXX_Merge(src proto.Message) {
	xxx_messageInfo_VariantAnnotation_ClinicalCondition.Merge(dst, src)
}
func (m *VariantAnnotation_ClinicalCondition) XXX_Size() int {
	return xxx_messageInfo_VariantAnnotation_ClinicalCondition.Size(m)
}
func (m *VariantAnnotation_ClinicalCondition) XXX_DiscardUnknown() {
	xxx_messageInfo_VariantAnnotation_ClinicalCondition.DiscardUnknown(m)
}

var xxx_messageInfo_VariantAnnotation_ClinicalCondition proto.InternalMessageInfo

func (m *VariantAnnotation_ClinicalCondition) GetNames() []string {
	if m != nil {
		return m.Names
	}
	return nil
}

func (m *VariantAnnotation_ClinicalCondition) GetExternalIds() []*ExternalId {
	if m != nil {
		return m.ExternalIds
	}
	return nil
}

func (m *VariantAnnotation_ClinicalCondition) GetConceptId() string {
	if m != nil {
		return m.ConceptId
	}
	return ""
}

func (m *VariantAnnotation_ClinicalCondition) GetOmimId() string {
	if m != nil {
		return m.OmimId
	}
	return ""
}

// A transcript represents the assertion that a particular region of the
// reference genome may be transcribed as RNA.
type Transcript struct {
	// The annotation ID of the gene from which this transcript is transcribed.
	GeneId string `protobuf:"bytes,1,opt,name=gene_id,json=geneId,proto3" json:"gene_id,omitempty"`
	// The <a href="http://en.wikipedia.org/wiki/Exon">exons</a> that compose
	// this transcript. This field should be unset for genomes where transcript
	// splicing does not occur, for example prokaryotes.
	//
	// Introns are regions of the transcript that are not included in the
	// spliced RNA product. Though not explicitly modeled here, intron ranges can
	// be deduced; all regions of this transcript that are not exons are introns.
	//
	// Exonic sequences do not necessarily code for a translational product
	// (amino acids). Only the regions of exons bounded by the
	// [codingSequence][google.genomics.v1.Transcript.coding_sequence] correspond
	// to coding DNA sequence.
	//
	// Exons are ordered by start position and may not overlap.
	Exons []*Transcript_Exon `protobuf:"bytes,2,rep,name=exons,proto3" json:"exons,omitempty"`
	// The range of the coding sequence for this transcript, if any. To determine
	// the exact ranges of coding sequence, intersect this range with those of the
	// [exons][google.genomics.v1.Transcript.exons], if any. If there are any
	// [exons][google.genomics.v1.Transcript.exons], the
	// [codingSequence][google.genomics.v1.Transcript.coding_sequence] must start
	// and end within them.
	//
	// Note that in some cases, the reference genome will not exactly match the
	// observed mRNA transcript e.g. due to variance in the source genome from
	// reference. In these cases,
	// [exon.frame][google.genomics.v1.Transcript.Exon.frame] will not necessarily
	// match the expected reference reading frame and coding exon reference bases
	// cannot necessarily be concatenated to produce the original transcript mRNA.
	CodingSequence       *Transcript_CodingSequence `protobuf:"bytes,3,opt,name=coding_sequence,json=codingSequence,proto3" json:"coding_sequence,omitempty"`
	XXX_NoUnkeyedLiteral struct{}                   `json:"-"`
	XXX_unrecognized     []byte                     `json:"-"`
	XXX_sizecache        int32                      `json:"-"`
}

func (m *Transcript) Reset()         { *m = Transcript{} }
func (m *Transcript) String() string { return proto.CompactTextString(m) }
func (*Transcript) ProtoMessage()    {}
func (*Transcript) Descriptor() ([]byte, []int) {
	return fileDescriptor_annotations_22f61783ae14922a, []int{3}
}
func (m *Transcript) XXX_Unmarshal(b []byte) error {
	return xxx_messageInfo_Transcript.Unmarshal(m, b)
}
func (m *Transcript) XXX_Marshal(b []byte, deterministic bool) ([]byte, error) {
	return xxx_messageInfo_Transcript.Marshal(b, m, deterministic)
}
func (dst *Transcript) XXX_Merge(src proto.Message) {
	xxx_messageInfo_Transcript.Merge(dst, src)
}
func (m *Transcript) XXX_Size() int {
	return xxx_messageInfo_Transcript.Size(m)
}
func (m *Transcript) XXX_DiscardUnknown() {
	xxx_messageInfo_Transcript.DiscardUnknown(m)
}

var xxx_messageInfo_Transcript proto.InternalMessageInfo

func (m *Transcript) GetGeneId() string {
	if m != nil {
		return m.GeneId
	}
	return ""
}

func (m *Transcript) GetExons() []*Transcript_Exon {
	if m != nil {
		return m.Exons
	}
	return nil
}

func (m *Transcript) GetCodingSequence() *Transcript_CodingSequence {
	if m != nil {
		return m.CodingSequence
	}
	return nil
}

type Transcript_Exon struct {
	// The start position of the exon on this annotation's reference sequence,
	// 0-based inclusive. Note that this is relative to the reference start, and
	// **not** the containing annotation start.
	Start int64 `protobuf:"varint,1,opt,name=start,proto3" json:"start,omitempty"`
	// The end position of the exon on this annotation's reference sequence,
	// 0-based exclusive. Note that this is relative to the reference start, and
	// *not* the containing annotation start.
	End int64 `protobuf:"varint,2,opt,name=end,proto3" json:"end,omitempty"`
	// The frame of this exon. Contains a value of 0, 1, or 2, which indicates
	// the offset of the first coding base of the exon within the reading frame
	// of the coding DNA sequence, if any. This field is dependent on the
	// strandedness of this annotation (see
	// [Annotation.reverse_strand][google.genomics.v1.Annotation.reverse_strand]).
	// For forward stranded annotations, this offset is relative to the
	// [exon.start][google.genomics.v1.Transcript.Exon.start]. For reverse
	// strand annotations, this offset is relative to the
	// [exon.end][google.genomics.v1.Transcript.Exon.end] `- 1`.
	//
	// Unset if this exon does not intersect the coding sequence. Upon creation
	// of a transcript, the frame must be populated for all or none of the
	// coding exons.
	Frame                *wrappers.Int32Value `protobuf:"bytes,3,opt,name=frame,proto3" json:"frame,omitempty"`
	XXX_NoUnkeyedLiteral struct{}             `json:"-"`
	XXX_unrecognized     []byte               `json:"-"`
	XXX_sizecache        int32                `json:"-"`
}

func (m *Transcript_Exon) Reset()         { *m = Transcript_Exon{} }
func (m *Transcript_Exon) String() string { return proto.CompactTextString(m) }
func (*Transcript_Exon) ProtoMessage()    {}
func (*Transcript_Exon) Descriptor() ([]byte, []int) {
	return fileDescriptor_annotations_22f61783ae14922a, []int{3, 0}
}
func (m *Transcript_Exon) XXX_Unmarshal(b []byte) error {
	return xxx_messageInfo_Transcript_Exon.Unmarshal(m, b)
}
func (m *Transcript_Exon) XXX_Marshal(b []byte, deterministic bool) ([]byte, error) {
	return xxx_messageInfo_Transcript_Exon.Marshal(b, m, deterministic)
}
func (dst *Transcript_Exon) XXX_Merge(src proto.Message) {
	xxx_messageInfo_Transcript_Exon.Merge(dst, src)
}
func (m *Transcript_Exon) XXX_Size() int {
	return xxx_messageInfo_Transcript_Exon.Size(m)
}
func (m *Transcript_Exon) XXX_DiscardUnknown() {
	xxx_messageInfo_Transcript_Exon.DiscardUnknown(m)
}

var xxx_messageInfo_Transcript_Exon proto.InternalMessageInfo

func (m *Transcript_Exon) GetStart() int64 {
	if m != nil {
		return m.Start
	}
	return 0
}

func (m *Transcript_Exon) GetEnd() int64 {
	if m != nil {
		return m.End
	}
	return 0
}

func (m *Transcript_Exon) GetFrame() *wrappers.Int32Value {
	if m != nil {
		return m.Frame
	}
	return nil
}

type Transcript_CodingSequence struct {
	// The start of the coding sequence on this annotation's reference sequence,
	// 0-based inclusive. Note that this position is relative to the reference
	// start, and *not* the containing annotation start.
	Start int64 `protobuf:"varint,1,opt,name=start,proto3" json:"start,omitempty"`
	// The end of the coding sequence on this annotation's reference sequence,
	// 0-based exclusive. Note that this position is relative to the reference
	// start, and *not* the containing annotation start.
	End                  int64    `protobuf:"varint,2,opt,name=end,proto3" json:"end,omitempty"`
	XXX_NoUnkeyedLiteral struct{} `json:"-"`
	XXX_unrecognized     []byte   `json:"-"`
	XXX_sizecache        int32    `json:"-"`
}

func (m *Transcript_CodingSequence) Reset()         { *m = Transcript_CodingSequence{} }
func (m *Transcript_CodingSequence) String() string { return proto.CompactTextString(m) }
func (*Transcript_CodingSequence) ProtoMessage()    {}
func (*Transcript_CodingSequence) Descriptor() ([]byte, []int) {
	return fileDescriptor_annotations_22f61783ae14922a, []int{3, 1}
}
func (m *Transcript_CodingSequence) XXX_Unmarshal(b []byte) error {
	return xxx_messageInfo_Transcript_CodingSequence.Unmarshal(m, b)
}
func (m *Transcript_CodingSequence) XXX_Marshal(b []byte, deterministic bool) ([]byte, error) {
	return xxx_messageInfo_Transcript_CodingSequence.Marshal(b, m, deterministic)
}
func (dst *Transcript_CodingSequence) XXX_Merge(src proto.Message) {
	xxx_messageInfo_Transcript_CodingSequence.Merge(dst, src)
}
func (m *Transcript_CodingSequence) XXX_Size() int {
	return xxx_messageInfo_Transcript_CodingSequence.Size(m)
}
func (m *Transcript_CodingSequence) XXX_DiscardUnknown() {
	xxx_messageInfo_Transcript_CodingSequence.DiscardUnknown(m)
}

var xxx_messageInfo_Transcript_CodingSequence proto.InternalMessageInfo

func (m *Transcript_CodingSequence) GetStart() int64 {
	if m != nil {
		return m.Start
	}
	return 0
}

func (m *Transcript_CodingSequence) GetEnd() int64 {
	if m != nil {
		return m.End
	}
	return 0
}

type ExternalId struct {
	// The name of the source of this data.
	SourceName string `protobuf:"bytes,1,opt,name=source_name,json=sourceName,proto3" json:"source_name,omitempty"`
	// The id used by the source of this data.
	Id                   string   `protobuf:"bytes,2,opt,name=id,proto3" json:"id,omitempty"`
	XXX_NoUnkeyedLiteral struct{} `json:"-"`
	XXX_unrecognized     []byte   `json:"-"`
	XXX_sizecache        int32    `json:"-"`
}

func (m *ExternalId) Reset()         { *m = ExternalId{} }
func (m *ExternalId) String() string { return proto.CompactTextString(m) }
func (*ExternalId) ProtoMessage()    {}
func (*ExternalId) Descriptor() ([]byte, []int) {
	return fileDescriptor_annotations_22f61783ae14922a, []int{4}
}
func (m *ExternalId) XXX_Unmarshal(b []byte) error {
	return xxx_messageInfo_ExternalId.Unmarshal(m, b)
}
func (m *ExternalId) XXX_Marshal(b []byte, deterministic bool) ([]byte, error) {
	return xxx_messageInfo_ExternalId.Marshal(b, m, deterministic)
}
func (dst *ExternalId) XXX_Merge(src proto.Message) {
	xxx_messageInfo_ExternalId.Merge(dst, src)
}
func (m *ExternalId) XXX_Size() int {
	return xxx_messageInfo_ExternalId.Size(m)
}
func (m *ExternalId) XXX_DiscardUnknown() {
	xxx_messageInfo_ExternalId.DiscardUnknown(m)
}

var xxx_messageInfo_ExternalId proto.InternalMessageInfo

func (m *ExternalId) GetSourceName() string {
	if m != nil {
		return m.SourceName
	}
	return ""
}

func (m *ExternalId) GetId() string {
	if m != nil {
		return m.Id
	}
	return ""
}

type CreateAnnotationSetRequest struct {
	// The annotation set to create.
	AnnotationSet        *AnnotationSet `protobuf:"bytes,1,opt,name=annotation_set,json=annotationSet,proto3" json:"annotation_set,omitempty"`
	XXX_NoUnkeyedLiteral struct{}       `json:"-"`
	XXX_unrecognized     []byte         `json:"-"`
	XXX_sizecache        int32          `json:"-"`
}

func (m *CreateAnnotationSetRequest) Reset()         { *m = CreateAnnotationSetRequest{} }
func (m *CreateAnnotationSetRequest) String() string { return proto.CompactTextString(m) }
func (*CreateAnnotationSetRequest) ProtoMessage()    {}
func (*CreateAnnotationSetRequest) Descriptor() ([]byte, []int) {
	return fileDescriptor_annotations_22f61783ae14922a, []int{5}
}
func (m *CreateAnnotationSetRequest) XXX_Unmarshal(b []byte) error {
	return xxx_messageInfo_CreateAnnotationSetRequest.Unmarshal(m, b)
}
func (m *CreateAnnotationSetRequest) XXX_Marshal(b []byte, deterministic bool) ([]byte, error) {
	return xxx_messageInfo_CreateAnnotationSetRequest.Marshal(b, m, deterministic)
}
func (dst *CreateAnnotationSetRequest) XXX_Merge(src proto.Message) {
	xxx_messageInfo_CreateAnnotationSetRequest.Merge(dst, src)
}
func (m *CreateAnnotationSetRequest) XXX_Size() int {
	return xxx_messageInfo_CreateAnnotationSetRequest.Size(m)
}
func (m *CreateAnnotationSetRequest) XXX_DiscardUnknown() {
	xxx_messageInfo_CreateAnnotationSetRequest.DiscardUnknown(m)
}

var xxx_messageInfo_CreateAnnotationSetRequest proto.InternalMessageInfo

func (m *CreateAnnotationSetRequest) GetAnnotationSet() *AnnotationSet {
	if m != nil {
		return m.AnnotationSet
	}
	return nil
}

type GetAnnotationSetRequest struct {
	// The ID of the annotation set to be retrieved.
	AnnotationSetId      string   `protobuf:"bytes,1,opt,name=annotation_set_id,json=annotationSetId,proto3" json:"annotation_set_id,omitempty"`
	XXX_NoUnkeyedLiteral struct{} `json:"-"`
	XXX_unrecognized     []byte   `json:"-"`
	XXX_sizecache        int32    `json:"-"`
}

func (m *GetAnnotationSetRequest) Reset()         { *m = GetAnnotationSetRequest{} }
func (m *GetAnnotationSetRequest) String() string { return proto.CompactTextString(m) }
func (*GetAnnotationSetRequest) ProtoMessage()    {}
func (*GetAnnotationSetRequest) Descriptor() ([]byte, []int) {
	return fileDescriptor_annotations_22f61783ae14922a, []int{6}
}
func (m *GetAnnotationSetRequest) XXX_Unmarshal(b []byte) error {
	return xxx_messageInfo_GetAnnotationSetRequest.Unmarshal(m, b)
}
func (m *GetAnnotationSetRequest) XXX_Marshal(b []byte, deterministic bool) ([]byte, error) {
	return xxx_messageInfo_GetAnnotationSetRequest.Marshal(b, m, deterministic)
}
func (dst *GetAnnotationSetRequest) XXX_Merge(src proto.Message) {
	xxx_messageInfo_GetAnnotationSetRequest.Merge(dst, src)
}
func (m *GetAnnotationSetRequest) XXX_Size() int {
	return xxx_messageInfo_GetAnnotationSetRequest.Size(m)
}
func (m *GetAnnotationSetRequest) XXX_DiscardUnknown() {
	xxx_messageInfo_GetAnnotationSetRequest.DiscardUnknown(m)
}

var xxx_messageInfo_GetAnnotationSetRequest proto.InternalMessageInfo

func (m *GetAnnotationSetRequest) GetAnnotationSetId() string {
	if m != nil {
		return m.AnnotationSetId
	}
	return ""
}

type UpdateAnnotationSetRequest struct {
	// The ID of the annotation set to be updated.
	AnnotationSetId string `protobuf:"bytes,1,opt,name=annotation_set_id,json=annotationSetId,proto3" json:"annotation_set_id,omitempty"`
	// The new annotation set.
	AnnotationSet *AnnotationSet `protobuf:"bytes,2,opt,name=annotation_set,json=annotationSet,proto3" json:"annotation_set,omitempty"`
	// An optional mask specifying which fields to update. Mutable fields are
	// [name][google.genomics.v1.AnnotationSet.name],
	// [source_uri][google.genomics.v1.AnnotationSet.source_uri], and
	// [info][google.genomics.v1.AnnotationSet.info]. If unspecified, all
	// mutable fields will be updated.
	UpdateMask           *field_mask.FieldMask `protobuf:"bytes,3,opt,name=update_mask,json=updateMask,proto3" json:"update_mask,omitempty"`
	XXX_NoUnkeyedLiteral struct{}              `json:"-"`
	XXX_unrecognized     []byte                `json:"-"`
	XXX_sizecache        int32                 `json:"-"`
}

func (m *UpdateAnnotationSetRequest) Reset()         { *m = UpdateAnnotationSetRequest{} }
func (m *UpdateAnnotationSetRequest) String() string { return proto.CompactTextString(m) }
func (*UpdateAnnotationSetRequest) ProtoMessage()    {}
func (*UpdateAnnotationSetRequest) Descriptor() ([]byte, []int) {
	return fileDescriptor_annotations_22f61783ae14922a, []int{7}
}
func (m *UpdateAnnotationSetRequest) XXX_Unmarshal(b []byte) error {
	return xxx_messageInfo_UpdateAnnotationSetRequest.Unmarshal(m, b)
}
func (m *UpdateAnnotationSetRequest) XXX_Marshal(b []byte, deterministic bool) ([]byte, error) {
	return xxx_messageInfo_UpdateAnnotationSetRequest.Marshal(b, m, deterministic)
}
func (dst *UpdateAnnotationSetRequest) XXX_Merge(src proto.Message) {
	xxx_messageInfo_UpdateAnnotationSetRequest.Merge(dst, src)
}
func (m *UpdateAnnotationSetRequest) XXX_Size() int {
	return xxx_messageInfo_UpdateAnnotationSetRequest.Size(m)
}
func (m *UpdateAnnotationSetRequest) XXX_DiscardUnknown() {
	xxx_messageInfo_UpdateAnnotationSetRequest.DiscardUnknown(m)
}

var xxx_messageInfo_UpdateAnnotationSetRequest proto.InternalMessageInfo

func (m *UpdateAnnotationSetRequest) GetAnnotationSetId() string {
	if m != nil {
		return m.AnnotationSetId
	}
	return ""
}

func (m *UpdateAnnotationSetRequest) GetAnnotationSet() *AnnotationSet {
	if m != nil {
		return m.AnnotationSet
	}
	return nil
}

func (m *UpdateAnnotationSetRequest) GetUpdateMask() *field_mask.FieldMask {
	if m != nil {
		return m.UpdateMask
	}
	return nil
}

type DeleteAnnotationSetRequest struct {
	// The ID of the annotation set to be deleted.
	AnnotationSetId      string   `protobuf:"bytes,1,opt,name=annotation_set_id,json=annotationSetId,proto3" json:"annotation_set_id,omitempty"`
	XXX_NoUnkeyedLiteral struct{} `json:"-"`
	XXX_unrecognized     []byte   `json:"-"`
	XXX_sizecache        int32    `json:"-"`
}

func (m *DeleteAnnotationSetRequest) Reset()         { *m = DeleteAnnotationSetRequest{} }
func (m *DeleteAnnotationSetRequest) String() string { return proto.CompactTextString(m) }
func (*DeleteAnnotationSetRequest) ProtoMessage()    {}
func (*DeleteAnnotationSetRequest) Descriptor() ([]byte, []int) {
	return fileDescriptor_annotations_22f61783ae14922a, []int{8}
}
func (m *DeleteAnnotationSetRequest) XXX_Unmarshal(b []byte) error {
	return xxx_messageInfo_DeleteAnnotationSetRequest.Unmarshal(m, b)
}
func (m *DeleteAnnotationSetRequest) XXX_Marshal(b []byte, deterministic bool) ([]byte, error) {
	return xxx_messageInfo_DeleteAnnotationSetRequest.Marshal(b, m, deterministic)
}
func (dst *DeleteAnnotationSetRequest) XXX_Merge(src proto.Message) {
	xxx_messageInfo_DeleteAnnotationSetRequest.Merge(dst, src)
}
func (m *DeleteAnnotationSetRequest) XXX_Size() int {
	return xxx_messageInfo_DeleteAnnotationSetRequest.Size(m)
}
func (m *DeleteAnnotationSetRequest) XXX_DiscardUnknown() {
	xxx_messageInfo_DeleteAnnotationSetRequest.DiscardUnknown(m)
}

var xxx_messageInfo_DeleteAnnotationSetRequest proto.InternalMessageInfo

func (m *DeleteAnnotationSetRequest) GetAnnotationSetId() string {
	if m != nil {
		return m.AnnotationSetId
	}
	return ""
}

type SearchAnnotationSetsRequest struct {
	// Required. The dataset IDs to search within. Caller must have `READ` access
	// to these datasets.
	DatasetIds []string `protobuf:"bytes,1,rep,name=dataset_ids,json=datasetIds,proto3" json:"dataset_ids,omitempty"`
	// If specified, only annotation sets associated with the given reference set
	// are returned.
	ReferenceSetId string `protobuf:"bytes,2,opt,name=reference_set_id,json=referenceSetId,proto3" json:"reference_set_id,omitempty"`
	// Only return annotations sets for which a substring of the name matches this
	// string (case insensitive).
	Name string `protobuf:"bytes,3,opt,name=name,proto3" json:"name,omitempty"`
	// If specified, only annotation sets that have any of these types are
	// returned.
	Types []AnnotationType `protobuf:"varint,4,rep,packed,name=types,proto3,enum=google.genomics.v1.AnnotationType" json:"types,omitempty"`
	// The continuation token, which is used to page through large result sets.
	// To get the next page of results, set this parameter to the value of
	// `nextPageToken` from the previous response.
	PageToken string `protobuf:"bytes,5,opt,name=page_token,json=pageToken,proto3" json:"page_token,omitempty"`
	// The maximum number of results to return in a single page. If unspecified,
	// defaults to 128. The maximum value is 1024.
	PageSize             int32    `protobuf:"varint,6,opt,name=page_size,json=pageSize,proto3" json:"page_size,omitempty"`
	XXX_NoUnkeyedLiteral struct{} `json:"-"`
	XXX_unrecognized     []byte   `json:"-"`
	XXX_sizecache        int32    `json:"-"`
}

func (m *SearchAnnotationSetsRequest) Reset()         { *m = SearchAnnotationSetsRequest{} }
func (m *SearchAnnotationSetsRequest) String() string { return proto.CompactTextString(m) }
func (*SearchAnnotationSetsRequest) ProtoMessage()    {}
func (*SearchAnnotationSetsRequest) Descriptor() ([]byte, []int) {
	return fileDescriptor_annotations_22f61783ae14922a, []int{9}
}
func (m *SearchAnnotationSetsRequest) XXX_Unmarshal(b []byte) error {
	return xxx_messageInfo_SearchAnnotationSetsRequest.Unmarshal(m, b)
}
func (m *SearchAnnotationSetsRequest) XXX_Marshal(b []byte, deterministic bool) ([]byte, error) {
	return xxx_messageInfo_SearchAnnotationSetsRequest.Marshal(b, m, deterministic)
}
func (dst *SearchAnnotationSetsRequest) XXX_Merge(src proto.Message) {
	xxx_messageInfo_SearchAnnotationSetsRequest.Merge(dst, src)
}
func (m *SearchAnnotationSetsRequest) XXX_Size() int {
	return xxx_messageInfo_SearchAnnotationSetsRequest.Size(m)
}
func (m *SearchAnnotationSetsRequest) XXX_DiscardUnknown() {
	xxx_messageInfo_SearchAnnotationSetsRequest.DiscardUnknown(m)
}

var xxx_messageInfo_SearchAnnotationSetsRequest proto.InternalMessageInfo

func (m *SearchAnnotationSetsRequest) GetDatasetIds() []string {
	if m != nil {
		return m.DatasetIds
	}
	return nil
}

func (m *SearchAnnotationSetsRequest) GetReferenceSetId() string {
	if m != nil {
		return m.ReferenceSetId
	}
	return ""
}

func (m *SearchAnnotationSetsRequest) GetName() string {
	if m != nil {
		return m.Name
	}
	return ""
}

func (m *SearchAnnotationSetsRequest) GetTypes() []AnnotationType {
	if m != nil {
		return m.Types
	}
	return nil
}

func (m *SearchAnnotationSetsRequest) GetPageToken() string {
	if m != nil {
		return m.PageToken
	}
	return ""
}

func (m *SearchAnnotationSetsRequest) GetPageSize() int32 {
	if m != nil {
		return m.PageSize
	}
	return 0
}

type SearchAnnotationSetsResponse struct {
	// The matching annotation sets.
	AnnotationSets []*AnnotationSet `protobuf:"bytes,1,rep,name=annotation_sets,json=annotationSets,proto3" json:"annotation_sets,omitempty"`
	// The continuation token, which is used to page through large result sets.
	// Provide this value in a subsequent request to return the next page of
	// results. This field will be empty if there aren't any additional results.
	NextPageToken        string   `protobuf:"bytes,2,opt,name=next_page_token,json=nextPageToken,proto3" json:"next_page_token,omitempty"`
	XXX_NoUnkeyedLiteral struct{} `json:"-"`
	XXX_unrecognized     []byte   `json:"-"`
	XXX_sizecache        int32    `json:"-"`
}

func (m *SearchAnnotationSetsResponse) Reset()         { *m = SearchAnnotationSetsResponse{} }
func (m *SearchAnnotationSetsResponse) String() string { return proto.CompactTextString(m) }
func (*SearchAnnotationSetsResponse) ProtoMessage()    {}
func (*SearchAnnotationSetsResponse) Descriptor() ([]byte, []int) {
	return fileDescriptor_annotations_22f61783ae14922a, []int{10}
}
func (m *SearchAnnotationSetsResponse) XXX_Unmarshal(b []byte) error {
	return xxx_messageInfo_SearchAnnotationSetsResponse.Unmarshal(m, b)
}
func (m *SearchAnnotationSetsResponse) XXX_Marshal(b []byte, deterministic bool) ([]byte, error) {
	return xxx_messageInfo_SearchAnnotationSetsResponse.Marshal(b, m, deterministic)
}
func (dst *SearchAnnotationSetsResponse) XXX_Merge(src proto.Message) {
	xxx_messageInfo_SearchAnnotationSetsResponse.Merge(dst, src)
}
func (m *SearchAnnotationSetsResponse) XXX_Size() int {
	return xxx_messageInfo_SearchAnnotationSetsResponse.Size(m)
}
func (m *SearchAnnotationSetsResponse) XXX_DiscardUnknown() {
	xxx_messageInfo_SearchAnnotationSetsResponse.DiscardUnknown(m)
}

var xxx_messageInfo_SearchAnnotationSetsResponse proto.InternalMessageInfo

func (m *SearchAnnotationSetsResponse) GetAnnotationSets() []*AnnotationSet {
	if m != nil {
		return m.AnnotationSets
	}
	return nil
}

func (m *SearchAnnotationSetsResponse) GetNextPageToken() string {
	if m != nil {
		return m.NextPageToken
	}
	return ""
}

type CreateAnnotationRequest struct {
	// The annotation to be created.
	Annotation           *Annotation `protobuf:"bytes,1,opt,name=annotation,proto3" json:"annotation,omitempty"`
	XXX_NoUnkeyedLiteral struct{}    `json:"-"`
	XXX_unrecognized     []byte      `json:"-"`
	XXX_sizecache        int32       `json:"-"`
}

func (m *CreateAnnotationRequest) Reset()         { *m = CreateAnnotationRequest{} }
func (m *CreateAnnotationRequest) String() string { return proto.CompactTextString(m) }
func (*CreateAnnotationRequest) ProtoMessage()    {}
func (*CreateAnnotationRequest) Descriptor() ([]byte, []int) {
	return fileDescriptor_annotations_22f61783ae14922a, []int{11}
}
func (m *CreateAnnotationRequest) XXX_Unmarshal(b []byte) error {
	return xxx_messageInfo_CreateAnnotationRequest.Unmarshal(m, b)
}
func (m *CreateAnnotationRequest) XXX_Marshal(b []byte, deterministic bool) ([]byte, error) {
	return xxx_messageInfo_CreateAnnotationRequest.Marshal(b, m, deterministic)
}
func (dst *CreateAnnotationRequest) XXX_Merge(src proto.Message) {
	xxx_messageInfo_CreateAnnotationRequest.Merge(dst, src)
}
func (m *CreateAnnotationRequest) XXX_Size() int {
	return xxx_messageInfo_CreateAnnotationRequest.Size(m)
}
func (m *CreateAnnotationRequest) XXX_DiscardUnknown() {
	xxx_messageInfo_CreateAnnotationRequest.DiscardUnknown(m)
}

var xxx_messageInfo_CreateAnnotationRequest proto.InternalMessageInfo

func (m *CreateAnnotationRequest) GetAnnotation() *Annotation {
	if m != nil {
		return m.Annotation
	}
	return nil
}

type BatchCreateAnnotationsRequest struct {
	// The annotations to be created. At most 4096 can be specified in a single
	// request.
	Annotations []*Annotation `protobuf:"bytes,1,rep,name=annotations,proto3" json:"annotations,omitempty"`
	// A unique request ID which enables the server to detect duplicated requests.
	// If provided, duplicated requests will result in the same response; if not
	// provided, duplicated requests may result in duplicated data. For a given
	// annotation set, callers should not reuse `request_id`s when writing
	// different batches of annotations - behavior in this case is undefined.
	// A common approach is to use a UUID. For batch jobs where worker crashes are
	// a possibility, consider using some unique variant of a worker or run ID.
	RequestId            string   `protobuf:"bytes,2,opt,name=request_id,json=requestId,proto3" json:"request_id,omitempty"`
	XXX_NoUnkeyedLiteral struct{} `json:"-"`
	XXX_unrecognized     []byte   `json:"-"`
	XXX_sizecache        int32    `json:"-"`
}

func (m *BatchCreateAnnotationsRequest) Reset()         { *m = BatchCreateAnnotationsRequest{} }
func (m *BatchCreateAnnotationsRequest) String() string { return proto.CompactTextString(m) }
func (*BatchCreateAnnotationsRequest) ProtoMessage()    {}
func (*BatchCreateAnnotationsRequest) Descriptor() ([]byte, []int) {
	return fileDescriptor_annotations_22f61783ae14922a, []int{12}
}
func (m *BatchCreateAnnotationsRequest) XXX_Unmarshal(b []byte) error {
	return xxx_messageInfo_BatchCreateAnnotationsRequest.Unmarshal(m, b)
}
func (m *BatchCreateAnnotationsRequest) XXX_Marshal(b []byte, deterministic bool) ([]byte, error) {
	return xxx_messageInfo_BatchCreateAnnotationsRequest.Marshal(b, m, deterministic)
}
func (dst *BatchCreateAnnotationsRequest) XXX_Merge(src proto.Message) {
	xxx_messageInfo_BatchCreateAnnotationsRequest.Merge(dst, src)
}
func (m *BatchCreateAnnotationsRequest) XXX_Size() int {
	return xxx_messageInfo_BatchCreateAnnotationsRequest.Size(m)
}
func (m *BatchCreateAnnotationsRequest) XXX_DiscardUnknown() {
	xxx_messageInfo_BatchCreateAnnotationsRequest.DiscardUnknown(m)
}

var xxx_messageInfo_BatchCreateAnnotationsRequest proto.InternalMessageInfo

func (m *BatchCreateAnnotationsRequest) GetAnnotations() []*Annotation {
	if m != nil {
		return m.Annotations
	}
	return nil
}

func (m *BatchCreateAnnotationsRequest) GetRequestId() string {
	if m != nil {
		return m.RequestId
	}
	return ""
}

type BatchCreateAnnotationsResponse struct {
	// The resulting per-annotation entries, ordered consistently with the
	// original request.
	Entries              []*BatchCreateAnnotationsResponse_Entry `protobuf:"bytes,1,rep,name=entries,proto3" json:"entries,omitempty"`
	XXX_NoUnkeyedLiteral struct{}                                `json:"-"`
	XXX_unrecognized     []byte                                  `json:"-"`
	XXX_sizecache        int32                                   `json:"-"`
}

func (m *BatchCreateAnnotationsResponse) Reset()         { *m = BatchCreateAnnotationsResponse{} }
func (m *BatchCreateAnnotationsResponse) String() string { return proto.CompactTextString(m) }
func (*BatchCreateAnnotationsResponse) ProtoMessage()    {}
func (*BatchCreateAnnotationsResponse) Descriptor() ([]byte, []int) {
	return fileDescriptor_annotations_22f61783ae14922a, []int{13}
}
func (m *BatchCreateAnnotationsResponse) XXX_Unmarshal(b []byte) error {
	return xxx_messageInfo_BatchCreateAnnotationsResponse.Unmarshal(m, b)
}
func (m *BatchCreateAnnotationsResponse) XXX_Marshal(b []byte, deterministic bool) ([]byte, error) {
	return xxx_messageInfo_BatchCreateAnnotationsResponse.Marshal(b, m, deterministic)
}
func (dst *BatchCreateAnnotationsResponse) XXX_Merge(src proto.Message) {
	xxx_messageInfo_BatchCreateAnnotationsResponse.Merge(dst, src)
}
func (m *BatchCreateAnnotationsResponse) XXX_Size() int {
	return xxx_messageInfo_BatchCreateAnnotationsResponse.Size(m)
}
func (m *BatchCreateAnnotationsResponse) XXX_DiscardUnknown() {
	xxx_messageInfo_BatchCreateAnnotationsResponse.DiscardUnknown(m)
}

var xxx_messageInfo_BatchCreateAnnotationsResponse proto.InternalMessageInfo

func (m *BatchCreateAnnotationsResponse) GetEntries() []*BatchCreateAnnotationsResponse_Entry {
	if m != nil {
		return m.Entries
	}
	return nil
}

type BatchCreateAnnotationsResponse_Entry struct {
	// The creation status.
	Status *status.Status `protobuf:"bytes,1,opt,name=status,proto3" json:"status,omitempty"`
	// The created annotation, if creation was successful.
	Annotation           *Annotation `protobuf:"bytes,2,opt,name=annotation,proto3" json:"annotation,omitempty"`
	XXX_NoUnkeyedLiteral struct{}    `json:"-"`
	XXX_unrecognized     []byte      `json:"-"`
	XXX_sizecache        int32       `json:"-"`
}

func (m *BatchCreateAnnotationsResponse_Entry) Reset()         { *m = BatchCreateAnnotationsResponse_Entry{} }
func (m *BatchCreateAnnotationsResponse_Entry) String() string { return proto.CompactTextString(m) }
func (*BatchCreateAnnotationsResponse_Entry) ProtoMessage()    {}
func (*BatchCreateAnnotationsResponse_Entry) Descriptor() ([]byte, []int) {
	return fileDescriptor_annotations_22f61783ae14922a, []int{13, 0}
}
func (m *BatchCreateAnnotationsResponse_Entry) XXX_Unmarshal(b []byte) error {
	return xxx_messageInfo_BatchCreateAnnotationsResponse_Entry.Unmarshal(m, b)
}
func (m *BatchCreateAnnotationsResponse_Entry) XXX_Marshal(b []byte, deterministic bool) ([]byte, error) {
	return xxx_messageInfo_BatchCreateAnnotationsResponse_Entry.Marshal(b, m, deterministic)
}
func (dst *BatchCreateAnnotationsResponse_Entry) XXX_Merge(src proto.Message) {
	xxx_messageInfo_BatchCreateAnnotationsResponse_Entry.Merge(dst, src)
}
func (m *BatchCreateAnnotationsResponse_Entry) XXX_Size() int {
	return xxx_messageInfo_BatchCreateAnnotationsResponse_Entry.Size(m)
}
func (m *BatchCreateAnnotationsResponse_Entry) XXX_DiscardUnknown() {
	xxx_messageInfo_BatchCreateAnnotationsResponse_Entry.DiscardUnknown(m)
}

var xxx_messageInfo_BatchCreateAnnotationsResponse_Entry proto.InternalMessageInfo

func (m *BatchCreateAnnotationsResponse_Entry) GetStatus() *status.Status {
	if m != nil {
		return m.Status
	}
	return nil
}

func (m *BatchCreateAnnotationsResponse_Entry) GetAnnotation() *Annotation {
	if m != nil {
		return m.Annotation
	}
	return nil
}

type GetAnnotationRequest struct {
	// The ID of the annotation to be retrieved.
	AnnotationId         string   `protobuf:"bytes,1,opt,name=annotation_id,json=annotationId,proto3" json:"annotation_id,omitempty"`
	XXX_NoUnkeyedLiteral struct{} `json:"-"`
	XXX_unrecognized     []byte   `json:"-"`
	XXX_sizecache        int32    `json:"-"`
}

func (m *GetAnnotationRequest) Reset()         { *m = GetAnnotationRequest{} }
func (m *GetAnnotationRequest) String() string { return proto.CompactTextString(m) }
func (*GetAnnotationRequest) ProtoMessage()    {}
func (*GetAnnotationRequest) Descriptor() ([]byte, []int) {
	return fileDescriptor_annotations_22f61783ae14922a, []int{14}
}
func (m *GetAnnotationRequest) XXX_Unmarshal(b []byte) error {
	return xxx_messageInfo_GetAnnotationRequest.Unmarshal(m, b)
}
func (m *GetAnnotationRequest) XXX_Marshal(b []byte, deterministic bool) ([]byte, error) {
	return xxx_messageInfo_GetAnnotationRequest.Marshal(b, m, deterministic)
}
func (dst *GetAnnotationRequest) XXX_Merge(src proto.Message) {
	xxx_messageInfo_GetAnnotationRequest.Merge(dst, src)
}
func (m *GetAnnotationRequest) XXX_Size() int {
	return xxx_messageInfo_GetAnnotationRequest.Size(m)
}
func (m *GetAnnotationRequest) XXX_DiscardUnknown() {
	xxx_messageInfo_GetAnnotationRequest.DiscardUnknown(m)
}

var xxx_messageInfo_GetAnnotationRequest proto.InternalMessageInfo

func (m *GetAnnotationRequest) GetAnnotationId() string {
	if m != nil {
		return m.AnnotationId
	}
	return ""
}

type UpdateAnnotationRequest struct {
	// The ID of the annotation to be updated.
	AnnotationId string `protobuf:"bytes,1,opt,name=annotation_id,json=annotationId,proto3" json:"annotation_id,omitempty"`
	// The new annotation.
	Annotation *Annotation `protobuf:"bytes,2,opt,name=annotation,proto3" json:"annotation,omitempty"`
	// An optional mask specifying which fields to update. Mutable fields are
	// [name][google.genomics.v1.Annotation.name],
	// [variant][google.genomics.v1.Annotation.variant],
	// [transcript][google.genomics.v1.Annotation.transcript], and
	// [info][google.genomics.v1.Annotation.info]. If unspecified, all mutable
	// fields will be updated.
	UpdateMask           *field_mask.FieldMask `protobuf:"bytes,3,opt,name=update_mask,json=updateMask,proto3" json:"update_mask,omitempty"`
	XXX_NoUnkeyedLiteral struct{}              `json:"-"`
	XXX_unrecognized     []byte                `json:"-"`
	XXX_sizecache        int32                 `json:"-"`
}

func (m *UpdateAnnotationRequest) Reset()         { *m = UpdateAnnotationRequest{} }
func (m *UpdateAnnotationRequest) String() string { return proto.CompactTextString(m) }
func (*UpdateAnnotationRequest) ProtoMessage()    {}
func (*UpdateAnnotationRequest) Descriptor() ([]byte, []int) {
	return fileDescriptor_annotations_22f61783ae14922a, []int{15}
}
func (m *UpdateAnnotationRequest) XXX_Unmarshal(b []byte) error {
	return xxx_messageInfo_UpdateAnnotationRequest.Unmarshal(m, b)
}
func (m *UpdateAnnotationRequest) XXX_Marshal(b []byte, deterministic bool) ([]byte, error) {
	return xxx_messageInfo_UpdateAnnotationRequest.Marshal(b, m, deterministic)
}
func (dst *UpdateAnnotationRequest) XXX_Merge(src proto.Message) {
	xxx_messageInfo_UpdateAnnotationRequest.Merge(dst, src)
}
func (m *UpdateAnnotationRequest) XXX_Size() int {
	return xxx_messageInfo_UpdateAnnotationRequest.Size(m)
}
func (m *UpdateAnnotationRequest) XXX_DiscardUnknown() {
	xxx_messageInfo_UpdateAnnotationRequest.DiscardUnknown(m)
}

var xxx_messageInfo_UpdateAnnotationRequest proto.InternalMessageInfo

func (m *UpdateAnnotationRequest) GetAnnotationId() string {
	if m != nil {
		return m.AnnotationId
	}
	return ""
}

func (m *UpdateAnnotationRequest) GetAnnotation() *Annotation {
	if m != nil {
		return m.Annotation
	}
	return nil
}

func (m *UpdateAnnotationRequest) GetUpdateMask() *field_mask.FieldMask {
	if m != nil {
		return m.UpdateMask
	}
	return nil
}

type DeleteAnnotationRequest struct {
	// The ID of the annotation to be deleted.
	AnnotationId         string   `protobuf:"bytes,1,opt,name=annotation_id,json=annotationId,proto3" json:"annotation_id,omitempty"`
	XXX_NoUnkeyedLiteral struct{} `json:"-"`
	XXX_unrecognized     []byte   `json:"-"`
	XXX_sizecache        int32    `json:"-"`
}

func (m *DeleteAnnotationRequest) Reset()         { *m = DeleteAnnotationRequest{} }
func (m *DeleteAnnotationRequest) String() string { return proto.CompactTextString(m) }
func (*DeleteAnnotationRequest) ProtoMessage()    {}
func (*DeleteAnnotationRequest) Descriptor() ([]byte, []int) {
	return fileDescriptor_annotations_22f61783ae14922a, []int{16}
}
func (m *DeleteAnnotationRequest) XXX_Unmarshal(b []byte) error {
	return xxx_messageInfo_DeleteAnnotationRequest.Unmarshal(m, b)
}
func (m *DeleteAnnotationRequest) XXX_Marshal(b []byte, deterministic bool) ([]byte, error) {
	return xxx_messageInfo_DeleteAnnotationRequest.Marshal(b, m, deterministic)
}
func (dst *DeleteAnnotationRequest) XXX_Merge(src proto.Message) {
	xxx_messageInfo_DeleteAnnotationRequest.Merge(dst, src)
}
func (m *DeleteAnnotationRequest) XXX_Size() int {
	return xxx_messageInfo_DeleteAnnotationRequest.Size(m)
}
func (m *DeleteAnnotationRequest) XXX_DiscardUnknown() {
	xxx_messageInfo_DeleteAnnotationRequest.DiscardUnknown(m)
}

var xxx_messageInfo_DeleteAnnotationRequest proto.InternalMessageInfo

func (m *DeleteAnnotationRequest) GetAnnotationId() string {
	if m != nil {
		return m.AnnotationId
	}
	return ""
}

type SearchAnnotationsRequest struct {
	// Required. The annotation sets to search within. The caller must have
	// `READ` access to these annotation sets.
	// All queried annotation sets must have the same type.
	AnnotationSetIds []string `protobuf:"bytes,1,rep,name=annotation_set_ids,json=annotationSetIds,proto3" json:"annotation_set_ids,omitempty"`
	// Required. `reference_id` or `reference_name` must be set.
	//
	// Types that are valid to be assigned to Reference:
	//	*SearchAnnotationsRequest_ReferenceId
	//	*SearchAnnotationsRequest_ReferenceName
	Reference isSearchAnnotationsRequest_Reference `protobuf_oneof:"reference"`
	// The start position of the range on the reference, 0-based inclusive. If
	// specified,
	// [referenceId][google.genomics.v1.SearchAnnotationsRequest.reference_id] or
	// [referenceName][google.genomics.v1.SearchAnnotationsRequest.reference_name]
	// must be specified. Defaults to 0.
	Start int64 `protobuf:"varint,4,opt,name=start,proto3" json:"start,omitempty"`
	// The end position of the range on the reference, 0-based exclusive. If
	// [referenceId][google.genomics.v1.SearchAnnotationsRequest.reference_id] or
	// [referenceName][google.genomics.v1.SearchAnnotationsRequest.reference_name]
	// must be specified, Defaults to the length of the reference.
	End int64 `protobuf:"varint,5,opt,name=end,proto3" json:"end,omitempty"`
	// The continuation token, which is used to page through large result sets.
	// To get the next page of results, set this parameter to the value of
	// `nextPageToken` from the previous response.
	PageToken string `protobuf:"bytes,6,opt,name=page_token,json=pageToken,proto3" json:"page_token,omitempty"`
	// The maximum number of results to return in a single page. If unspecified,
	// defaults to 256. The maximum value is 2048.
	PageSize             int32    `protobuf:"varint,7,opt,name=page_size,json=pageSize,proto3" json:"page_size,omitempty"`
	XXX_NoUnkeyedLiteral struct{} `json:"-"`
	XXX_unrecognized     []byte   `json:"-"`
	XXX_sizecache        int32    `json:"-"`
}

func (m *SearchAnnotationsRequest) Reset()         { *m = SearchAnnotationsRequest{} }
func (m *SearchAnnotationsRequest) String() string { return proto.CompactTextString(m) }
func (*SearchAnnotationsRequest) ProtoMessage()    {}
func (*SearchAnnotationsRequest) Descriptor() ([]byte, []int) {
	return fileDescriptor_annotations_22f61783ae14922a, []int{17}
}
func (m *SearchAnnotationsRequest) XXX_Unmarshal(b []byte) error {
	return xxx_messageInfo_SearchAnnotationsRequest.Unmarshal(m, b)
}
func (m *SearchAnnotationsRequest) XXX_Marshal(b []byte, deterministic bool) ([]byte, error) {
	return xxx_messageInfo_SearchAnnotationsRequest.Marshal(b, m, deterministic)
}
func (dst *SearchAnnotationsRequest) XXX_Merge(src proto.Message) {
	xxx_messageInfo_SearchAnnotationsRequest.Merge(dst, src)
}
func (m *SearchAnnotationsRequest) XXX_Size() int {
	return xxx_messageInfo_SearchAnnotationsRequest.Size(m)
}
func (m *SearchAnnotationsRequest) XXX_DiscardUnknown() {
	xxx_messageInfo_SearchAnnotationsRequest.DiscardUnknown(m)
}

var xxx_messageInfo_SearchAnnotationsRequest proto.InternalMessageInfo

func (m *SearchAnnotationsRequest) GetAnnotationSetIds() []string {
	if m != nil {
		return m.AnnotationSetIds
	}
	return nil
}

type isSearchAnnotationsRequest_Reference interface {
	isSearchAnnotationsRequest_Reference()
}

type SearchAnnotationsRequest_ReferenceId struct {
	ReferenceId string `protobuf:"bytes,2,opt,name=reference_id,json=referenceId,proto3,oneof"`
}

type SearchAnnotationsRequest_ReferenceName struct {
	ReferenceName string `protobuf:"bytes,3,opt,name=reference_name,json=referenceName,proto3,oneof"`
}

func (*SearchAnnotationsRequest_ReferenceId) isSearchAnnotationsRequest_Reference() {}

func (*SearchAnnotationsRequest_ReferenceName) isSearchAnnotationsRequest_Reference() {}

func (m *SearchAnnotationsRequest) GetReference() isSearchAnnotationsRequest_Reference {
	if m != nil {
		return m.Reference
	}
	return nil
}

func (m *SearchAnnotationsRequest) GetReferenceId() string {
	if x, ok := m.GetReference().(*SearchAnnotationsRequest_ReferenceId); ok {
		return x.ReferenceId
	}
	return ""
}

func (m *SearchAnnotationsRequest) GetReferenceName() string {
	if x, ok := m.GetReference().(*SearchAnnotationsRequest_ReferenceName); ok {
		return x.ReferenceName
	}
	return ""
}

func (m *SearchAnnotationsRequest) GetStart() int64 {
	if m != nil {
		return m.Start
	}
	return 0
}

func (m *SearchAnnotationsRequest) GetEnd() int64 {
	if m != nil {
		return m.End
	}
	return 0
}

func (m *SearchAnnotationsRequest) GetPageToken() string {
	if m != nil {
		return m.PageToken
	}
	return ""
}

func (m *SearchAnnotationsRequest) GetPageSize() int32 {
	if m != nil {
		return m.PageSize
	}
	return 0
}

// XXX_OneofFuncs is for the internal use of the proto package.
func (*SearchAnnotationsRequest) XXX_OneofFuncs() (func(msg proto.Message, b *proto.Buffer) error, func(msg proto.Message, tag, wire int, b *proto.Buffer) (bool, error), func(msg proto.Message) (n int), []interface{}) {
	return _SearchAnnotationsRequest_OneofMarshaler, _SearchAnnotationsRequest_OneofUnmarshaler, _SearchAnnotationsRequest_OneofSizer, []interface{}{
		(*SearchAnnotationsRequest_ReferenceId)(nil),
		(*SearchAnnotationsRequest_ReferenceName)(nil),
	}
}

func _SearchAnnotationsRequest_OneofMarshaler(msg proto.Message, b *proto.Buffer) error {
	m := msg.(*SearchAnnotationsRequest)
	// reference
	switch x := m.Reference.(type) {
	case *SearchAnnotationsRequest_ReferenceId:
		b.EncodeVarint(2<<3 | proto.WireBytes)
		b.EncodeStringBytes(x.ReferenceId)
	case *SearchAnnotationsRequest_ReferenceName:
		b.EncodeVarint(3<<3 | proto.WireBytes)
		b.EncodeStringBytes(x.ReferenceName)
	case nil:
	default:
		return fmt.Errorf("SearchAnnotationsRequest.Reference has unexpected type %T", x)
	}
	return nil
}

func _SearchAnnotationsRequest_OneofUnmarshaler(msg proto.Message, tag, wire int, b *proto.Buffer) (bool, error) {
	m := msg.(*SearchAnnotationsRequest)
	switch tag {
	case 2: // reference.reference_id
		if wire != proto.WireBytes {
			return true, proto.ErrInternalBadWireType
		}
		x, err := b.DecodeStringBytes()
		m.Reference = &SearchAnnotationsRequest_ReferenceId{x}
		return true, err
	case 3: // reference.reference_name
		if wire != proto.WireBytes {
			return true, proto.ErrInternalBadWireType
		}
		x, err := b.DecodeStringBytes()
		m.Reference = &SearchAnnotationsRequest_ReferenceName{x}
		return true, err
	default:
		return false, nil
	}
}

func _SearchAnnotationsRequest_OneofSizer(msg proto.Message) (n int) {
	m := msg.(*SearchAnnotationsRequest)
	// reference
	switch x := m.Reference.(type) {
	case *SearchAnnotationsRequest_ReferenceId:
		n += 1 // tag and wire
		n += proto.SizeVarint(uint64(len(x.ReferenceId)))
		n += len(x.ReferenceId)
	case *SearchAnnotationsRequest_ReferenceName:
		n += 1 // tag and wire
		n += proto.SizeVarint(uint64(len(x.ReferenceName)))
		n += len(x.ReferenceName)
	case nil:
	default:
		panic(fmt.Sprintf("proto: unexpected type %T in oneof", x))
	}
	return n
}

type SearchAnnotationsResponse struct {
	// The matching annotations.
	Annotations []*Annotation `protobuf:"bytes,1,rep,name=annotations,proto3" json:"annotations,omitempty"`
	// The continuation token, which is used to page through large result sets.
	// Provide this value in a subsequent request to return the next page of
	// results. This field will be empty if there aren't any additional results.
	NextPageToken        string   `protobuf:"bytes,2,opt,name=next_page_token,json=nextPageToken,proto3" json:"next_page_token,omitempty"`
	XXX_NoUnkeyedLiteral struct{} `json:"-"`
	XXX_unrecognized     []byte   `json:"-"`
	XXX_sizecache        int32    `json:"-"`
}

func (m *SearchAnnotationsResponse) Reset()         { *m = SearchAnnotationsResponse{} }
func (m *SearchAnnotationsResponse) String() string { return proto.CompactTextString(m) }
func (*SearchAnnotationsResponse) ProtoMessage()    {}
func (*SearchAnnotationsResponse) Descriptor() ([]byte, []int) {
	return fileDescriptor_annotations_22f61783ae14922a, []int{18}
}
func (m *SearchAnnotationsResponse) XXX_Unmarshal(b []byte) error {
	return xxx_messageInfo_SearchAnnotationsResponse.Unmarshal(m, b)
}
func (m *SearchAnnotationsResponse) XXX_Marshal(b []byte, deterministic bool) ([]byte, error) {
	return xxx_messageInfo_SearchAnnotationsResponse.Marshal(b, m, deterministic)
}
func (dst *SearchAnnotationsResponse) XXX_Merge(src proto.Message) {
	xxx_messageInfo_SearchAnnotationsResponse.Merge(dst, src)
}
func (m *SearchAnnotationsResponse) XXX_Size() int {
	return xxx_messageInfo_SearchAnnotationsResponse.Size(m)
}
func (m *SearchAnnotationsResponse) XXX_DiscardUnknown() {
	xxx_messageInfo_SearchAnnotationsResponse.DiscardUnknown(m)
}

var xxx_messageInfo_SearchAnnotationsResponse proto.InternalMessageInfo

func (m *SearchAnnotationsResponse) GetAnnotations() []*Annotation {
	if m != nil {
		return m.Annotations
	}
	return nil
}

func (m *SearchAnnotationsResponse) GetNextPageToken() string {
	if m != nil {
		return m.NextPageToken
	}
	return ""
}

func init() {
	proto.RegisterType((*AnnotationSet)(nil), "google.genomics.v1.AnnotationSet")
	proto.RegisterMapType((map[string]*_struct.ListValue)(nil), "google.genomics.v1.AnnotationSet.InfoEntry")
	proto.RegisterType((*Annotation)(nil), "google.genomics.v1.Annotation")
	proto.RegisterMapType((map[string]*_struct.ListValue)(nil), "google.genomics.v1.Annotation.InfoEntry")
	proto.RegisterType((*VariantAnnotation)(nil), "google.genomics.v1.VariantAnnotation")
	proto.RegisterType((*VariantAnnotation_ClinicalCondition)(nil), "google.genomics.v1.VariantAnnotation.ClinicalCondition")
	proto.RegisterType((*Transcript)(nil), "google.genomics.v1.Transcript")
	proto.RegisterType((*Transcript_Exon)(nil), "google.genomics.v1.Transcript.Exon")
	proto.RegisterType((*Transcript_CodingSequence)(nil), "google.genomics.v1.Transcript.CodingSequence")
	proto.RegisterType((*ExternalId)(nil), "google.genomics.v1.ExternalId")
	proto.RegisterType((*CreateAnnotationSetRequest)(nil), "google.genomics.v1.CreateAnnotationSetRequest")
	proto.RegisterType((*GetAnnotationSetRequest)(nil), "google.genomics.v1.GetAnnotationSetRequest")
	proto.RegisterType((*UpdateAnnotationSetRequest)(nil), "google.genomics.v1.UpdateAnnotationSetRequest")
	proto.RegisterType((*DeleteAnnotationSetRequest)(nil), "google.genomics.v1.DeleteAnnotationSetRequest")
	proto.RegisterType((*SearchAnnotationSetsRequest)(nil), "google.genomics.v1.SearchAnnotationSetsRequest")
	proto.RegisterType((*SearchAnnotationSetsResponse)(nil), "google.genomics.v1.SearchAnnotationSetsResponse")
	proto.RegisterType((*CreateAnnotationRequest)(nil), "google.genomics.v1.CreateAnnotationRequest")
	proto.RegisterType((*BatchCreateAnnotationsRequest)(nil), "google.genomics.v1.BatchCreateAnnotationsRequest")
	proto.RegisterType((*BatchCreateAnnotationsResponse)(nil), "google.genomics.v1.BatchCreateAnnotationsResponse")
	proto.RegisterType((*BatchCreateAnnotationsResponse_Entry)(nil), "google.genomics.v1.BatchCreateAnnotationsResponse.Entry")
	proto.RegisterType((*GetAnnotationRequest)(nil), "google.genomics.v1.GetAnnotationRequest")
	proto.RegisterType((*UpdateAnnotationRequest)(nil), "google.genomics.v1.UpdateAnnotationRequest")
	proto.RegisterType((*DeleteAnnotationRequest)(nil), "google.genomics.v1.DeleteAnnotationRequest")
	proto.RegisterType((*SearchAnnotationsRequest)(nil), "google.genomics.v1.SearchAnnotationsRequest")
	proto.RegisterType((*SearchAnnotationsResponse)(nil), "google.genomics.v1.SearchAnnotationsResponse")
	proto.RegisterEnum("google.genomics.v1.AnnotationType", AnnotationType_name, AnnotationType_value)
	proto.RegisterEnum("google.genomics.v1.VariantAnnotation_Type", VariantAnnotation_Type_name, VariantAnnotation_Type_value)
	proto.RegisterEnum("google.genomics.v1.VariantAnnotation_Effect", VariantAnnotation_Effect_name, VariantAnnotation_Effect_value)
	proto.RegisterEnum("google.genomics.v1.VariantAnnotation_ClinicalSignificance", VariantAnnotation_ClinicalSignificance_name, VariantAnnotation_ClinicalSignificance_value)
}

// Reference imports to suppress errors if they are not otherwise used.
var _ context.Context
var _ grpc.ClientConn

// This is a compile-time assertion to ensure that this generated file
// is compatible with the grpc package it is being compiled against.
const _ = grpc.SupportPackageIsVersion4

// AnnotationServiceV1Client is the client API for AnnotationServiceV1 service.
//
// For semantics around ctx use and closing/ending streaming RPCs, please refer to https://godoc.org/google.golang.org/grpc#ClientConn.NewStream.
type AnnotationServiceV1Client interface {
	// Creates a new annotation set. Caller must have WRITE permission for the
	// associated dataset.
	//
	// The following fields are required:
	//
	//   * [datasetId][google.genomics.v1.AnnotationSet.dataset_id]
	//   * [referenceSetId][google.genomics.v1.AnnotationSet.reference_set_id]
	//
	// All other fields may be optionally specified, unless documented as being
	// server-generated (for example, the `id` field).
	CreateAnnotationSet(ctx context.Context, in *CreateAnnotationSetRequest, opts ...grpc.CallOption) (*AnnotationSet, error)
	// Gets an annotation set. Caller must have READ permission for
	// the associated dataset.
	GetAnnotationSet(ctx context.Context, in *GetAnnotationSetRequest, opts ...grpc.CallOption) (*AnnotationSet, error)
	// Updates an annotation set. The update must respect all mutability
	// restrictions and other invariants described on the annotation set resource.
	// Caller must have WRITE permission for the associated dataset.
	UpdateAnnotationSet(ctx context.Context, in *UpdateAnnotationSetRequest, opts ...grpc.CallOption) (*AnnotationSet, error)
	// Deletes an annotation set. Caller must have WRITE permission
	// for the associated annotation set.
	DeleteAnnotationSet(ctx context.Context, in *DeleteAnnotationSetRequest, opts ...grpc.CallOption) (*empty.Empty, error)
	// Searches for annotation sets that match the given criteria. Annotation sets
	// are returned in an unspecified order. This order is consistent, such that
	// two queries for the same content (regardless of page size) yield annotation
	// sets in the same order across their respective streams of paginated
	// responses. Caller must have READ permission for the queried datasets.
	SearchAnnotationSets(ctx context.Context, in *SearchAnnotationSetsRequest, opts ...grpc.CallOption) (*SearchAnnotationSetsResponse, error)
	// Creates a new annotation. Caller must have WRITE permission
	// for the associated annotation set.
	//
	// The following fields are required:
	//
	// * [annotationSetId][google.genomics.v1.Annotation.annotation_set_id]
	// * [referenceName][google.genomics.v1.Annotation.reference_name] or
	//   [referenceId][google.genomics.v1.Annotation.reference_id]
	//
	// ### Transcripts
	//
	// For annotations of type TRANSCRIPT, the following fields of
	// [transcript][google.genomics.v1.Annotation.transcript] must be provided:
	//
	// * [exons.start][google.genomics.v1.Transcript.Exon.start]
	// * [exons.end][google.genomics.v1.Transcript.Exon.end]
	//
	// All other fields may be optionally specified, unless documented as being
	// server-generated (for example, the `id` field). The annotated
	// range must be no longer than 100Mbp (mega base pairs). See the
	// [Annotation resource][google.genomics.v1.Annotation]
	// for additional restrictions on each field.
	CreateAnnotation(ctx context.Context, in *CreateAnnotationRequest, opts ...grpc.CallOption) (*Annotation, error)
	// Creates one or more new annotations atomically. All annotations must
	// belong to the same annotation set. Caller must have WRITE
	// permission for this annotation set. For optimal performance, batch
	// positionally adjacent annotations together.
	//
	// If the request has a systemic issue, such as an attempt to write to
	// an inaccessible annotation set, the entire RPC will fail accordingly. For
	// lesser data issues, when possible an error will be isolated to the
	// corresponding batch entry in the response; the remaining well formed
	// annotations will be created normally.
	//
	// For details on the requirements for each individual annotation resource,
	// see
	// [CreateAnnotation][google.genomics.v1.AnnotationServiceV1.CreateAnnotation].
	BatchCreateAnnotations(ctx context.Context, in *BatchCreateAnnotationsRequest, opts ...grpc.CallOption) (*BatchCreateAnnotationsResponse, error)
	// Gets an annotation. Caller must have READ permission
	// for the associated annotation set.
	GetAnnotation(ctx context.Context, in *GetAnnotationRequest, opts ...grpc.CallOption) (*Annotation, error)
	// Updates an annotation. Caller must have
	// WRITE permission for the associated dataset.
	UpdateAnnotation(ctx context.Context, in *UpdateAnnotationRequest, opts ...grpc.CallOption) (*Annotation, error)
	// Deletes an annotation. Caller must have WRITE permission for
	// the associated annotation set.
	DeleteAnnotation(ctx context.Context, in *DeleteAnnotationRequest, opts ...grpc.CallOption) (*empty.Empty, error)
	// Searches for annotations that match the given criteria. Results are
	// ordered by genomic coordinate (by reference sequence, then position).
	// Annotations with equivalent genomic coordinates are returned in an
	// unspecified order. This order is consistent, such that two queries for the
	// same content (regardless of page size) yield annotations in the same order
	// across their respective streams of paginated responses. Caller must have
	// READ permission for the queried annotation sets.
	SearchAnnotations(ctx context.Context, in *SearchAnnotationsRequest, opts ...grpc.CallOption) (*SearchAnnotationsResponse, error)
}

type annotationServiceV1Client struct {
	cc *grpc.ClientConn
}

func NewAnnotationServiceV1Client(cc *grpc.ClientConn) AnnotationServiceV1Client {
	return &annotationServiceV1Client{cc}
}

func (c *annotationServiceV1Client) CreateAnnotationSet(ctx context.Context, in *CreateAnnotationSetRequest, opts ...grpc.CallOption) (*AnnotationSet, error) {
	out := new(AnnotationSet)
	err := c.cc.Invoke(ctx, "/google.genomics.v1.AnnotationServiceV1/CreateAnnotationSet", in, out, opts...)
	if err != nil {
		return nil, err
	}
	return out, nil
}

func (c *annotationServiceV1Client) GetAnnotationSet(ctx context.Context, in *GetAnnotationSetRequest, opts ...grpc.CallOption) (*AnnotationSet, error) {
	out := new(AnnotationSet)
	err := c.cc.Invoke(ctx, "/google.genomics.v1.AnnotationServiceV1/GetAnnotationSet", in, out, opts...)
	if err != nil {
		return nil, err
	}
	return out, nil
}

func (c *annotationServiceV1Client) UpdateAnnotationSet(ctx context.Context, in *UpdateAnnotationSetRequest, opts ...grpc.CallOption) (*AnnotationSet, error) {
	out := new(AnnotationSet)
	err := c.cc.Invoke(ctx, "/google.genomics.v1.AnnotationServiceV1/UpdateAnnotationSet", in, out, opts...)
	if err != nil {
		return nil, err
	}
	return out, nil
}

func (c *annotationServiceV1Client) DeleteAnnotationSet(ctx context.Context, in *DeleteAnnotationSetRequest, opts ...grpc.CallOption) (*empty.Empty, error) {
	out := new(empty.Empty)
	err := c.cc.Invoke(ctx, "/google.genomics.v1.AnnotationServiceV1/DeleteAnnotationSet", in, out, opts...)
	if err != nil {
		return nil, err
	}
	return out, nil
}

func (c *annotationServiceV1Client) SearchAnnotationSets(ctx context.Context, in *SearchAnnotationSetsRequest, opts ...grpc.CallOption) (*SearchAnnotationSetsResponse, error) {
	out := new(SearchAnnotationSetsResponse)
	err := c.cc.Invoke(ctx, "/google.genomics.v1.AnnotationServiceV1/SearchAnnotationSets", in, out, opts...)
	if err != nil {
		return nil, err
	}
	return out, nil
}

func (c *annotationServiceV1Client) CreateAnnotation(ctx context.Context, in *CreateAnnotationRequest, opts ...grpc.CallOption) (*Annotation, error) {
	out := new(Annotation)
	err := c.cc.Invoke(ctx, "/google.genomics.v1.AnnotationServiceV1/CreateAnnotation", in, out, opts...)
	if err != nil {
		return nil, err
	}
	return out, nil
}

func (c *annotationServiceV1Client) BatchCreateAnnotations(ctx context.Context, in *BatchCreateAnnotationsRequest, opts ...grpc.CallOption) (*BatchCreateAnnotationsResponse, error) {
	out := new(BatchCreateAnnotationsResponse)
	err := c.cc.Invoke(ctx, "/google.genomics.v1.AnnotationServiceV1/BatchCreateAnnotations", in, out, opts...)
	if err != nil {
		return nil, err
	}
	return out, nil
}

func (c *annotationServiceV1Client) GetAnnotation(ctx context.Context, in *GetAnnotationRequest, opts ...grpc.CallOption) (*Annotation, error) {
	out := new(Annotation)
	err := c.cc.Invoke(ctx, "/google.genomics.v1.AnnotationServiceV1/GetAnnotation", in, out, opts...)
	if err != nil {
		return nil, err
	}
	return out, nil
}

func (c *annotationServiceV1Client) UpdateAnnotation(ctx context.Context, in *UpdateAnnotationRequest, opts ...grpc.CallOption) (*Annotation, error) {
	out := new(Annotation)
	err := c.cc.Invoke(ctx, "/google.genomics.v1.AnnotationServiceV1/UpdateAnnotation", in, out, opts...)
	if err != nil {
		return nil, err
	}
	return out, nil
}

func (c *annotationServiceV1Client) DeleteAnnotation(ctx context.Context, in *DeleteAnnotationRequest, opts ...grpc.CallOption) (*empty.Empty, error) {
	out := new(empty.Empty)
	err := c.cc.Invoke(ctx, "/google.genomics.v1.AnnotationServiceV1/DeleteAnnotation", in, out, opts...)
	if err != nil {
		return nil, err
	}
	return out, nil
}

func (c *annotationServiceV1Client) SearchAnnotations(ctx context.Context, in *SearchAnnotationsRequest, opts ...grpc.CallOption) (*SearchAnnotationsResponse, error) {
	out := new(SearchAnnotationsResponse)
	err := c.cc.Invoke(ctx, "/google.genomics.v1.AnnotationServiceV1/SearchAnnotations", in, out, opts...)
	if err != nil {
		return nil, err
	}
	return out, nil
}

// AnnotationServiceV1Server is the server API for AnnotationServiceV1 service.
type AnnotationServiceV1Server interface {
	// Creates a new annotation set. Caller must have WRITE permission for the
	// associated dataset.
	//
	// The following fields are required:
	//
	//   * [datasetId][google.genomics.v1.AnnotationSet.dataset_id]
	//   * [referenceSetId][google.genomics.v1.AnnotationSet.reference_set_id]
	//
	// All other fields may be optionally specified, unless documented as being
	// server-generated (for example, the `id` field).
	CreateAnnotationSet(context.Context, *CreateAnnotationSetRequest) (*AnnotationSet, error)
	// Gets an annotation set. Caller must have READ permission for
	// the associated dataset.
	GetAnnotationSet(context.Context, *GetAnnotationSetRequest) (*AnnotationSet, error)
	// Updates an annotation set. The update must respect all mutability
	// restrictions and other invariants described on the annotation set resource.
	// Caller must have WRITE permission for the associated dataset.
	UpdateAnnotationSet(context.Context, *UpdateAnnotationSetRequest) (*AnnotationSet, error)
	// Deletes an annotation set. Caller must have WRITE permission
	// for the associated annotation set.
	DeleteAnnotationSet(context.Context, *DeleteAnnotationSetRequest) (*empty.Empty, error)
	// Searches for annotation sets that match the given criteria. Annotation sets
	// are returned in an unspecified order. This order is consistent, such that
	// two queries for the same content (regardless of page size) yield annotation
	// sets in the same order across their respective streams of paginated
	// responses. Caller must have READ permission for the queried datasets.
	SearchAnnotationSets(context.Context, *SearchAnnotationSetsRequest) (*SearchAnnotationSetsResponse, error)
	// Creates a new annotation. Caller must have WRITE permission
	// for the associated annotation set.
	//
	// The following fields are required:
	//
	// * [annotationSetId][google.genomics.v1.Annotation.annotation_set_id]
	// * [referenceName][google.genomics.v1.Annotation.reference_name] or
	//   [referenceId][google.genomics.v1.Annotation.reference_id]
	//
	// ### Transcripts
	//
	// For annotations of type TRANSCRIPT, the following fields of
	// [transcript][google.genomics.v1.Annotation.transcript] must be provided:
	//
	// * [exons.start][google.genomics.v1.Transcript.Exon.start]
	// * [exons.end][google.genomics.v1.Transcript.Exon.end]
	//
	// All other fields may be optionally specified, unless documented as being
	// server-generated (for example, the `id` field). The annotated
	// range must be no longer than 100Mbp (mega base pairs). See the
	// [Annotation resource][google.genomics.v1.Annotation]
	// for additional restrictions on each field.
	CreateAnnotation(context.Context, *CreateAnnotationRequest) (*Annotation, error)
	// Creates one or more new annotations atomically. All annotations must
	// belong to the same annotation set. Caller must have WRITE
	// permission for this annotation set. For optimal performance, batch
	// positionally adjacent annotations together.
	//
	// If the request has a systemic issue, such as an attempt to write to
	// an inaccessible annotation set, the entire RPC will fail accordingly. For
	// lesser data issues, when possible an error will be isolated to the
	// corresponding batch entry in the response; the remaining well formed
	// annotations will be created normally.
	//
	// For details on the requirements for each individual annotation resource,
	// see
	// [CreateAnnotation][google.genomics.v1.AnnotationServiceV1.CreateAnnotation].
	BatchCreateAnnotations(context.Context, *BatchCreateAnnotationsRequest) (*BatchCreateAnnotationsResponse, error)
	// Gets an annotation. Caller must have READ permission
	// for the associated annotation set.
	GetAnnotation(context.Context, *GetAnnotationRequest) (*Annotation, error)
	// Updates an annotation. Caller must have
	// WRITE permission for the associated dataset.
	UpdateAnnotation(context.Context, *UpdateAnnotationRequest) (*Annotation, error)
	// Deletes an annotation. Caller must have WRITE permission for
	// the associated annotation set.
	DeleteAnnotation(context.Context, *DeleteAnnotationRequest) (*empty.Empty, error)
	// Searches for annotations that match the given criteria. Results are
	// ordered by genomic coordinate (by reference sequence, then position).
	// Annotations with equivalent genomic coordinates are returned in an
	// unspecified order. This order is consistent, such that two queries for the
	// same content (regardless of page size) yield annotations in the same order
	// across their respective streams of paginated responses. Caller must have
	// READ permission for the queried annotation sets.
	SearchAnnotations(context.Context, *SearchAnnotationsRequest) (*SearchAnnotationsResponse, error)
}

func RegisterAnnotationServiceV1Server(s *grpc.Server, srv AnnotationServiceV1Server) {
	s.RegisterService(&_AnnotationServiceV1_serviceDesc, srv)
}

func _AnnotationServiceV1_CreateAnnotationSet_Handler(srv interface{}, ctx context.Context, dec func(interface{}) error, interceptor grpc.UnaryServerInterceptor) (interface{}, error) {
	in := new(CreateAnnotationSetRequest)
	if err := dec(in); err != nil {
		return nil, err
	}
	if interceptor == nil {
		return srv.(AnnotationServiceV1Server).CreateAnnotationSet(ctx, in)
	}
	info := &grpc.UnaryServerInfo{
		Server:     srv,
		FullMethod: "/google.genomics.v1.AnnotationServiceV1/CreateAnnotationSet",
	}
	handler := func(ctx context.Context, req interface{}) (interface{}, error) {
		return srv.(AnnotationServiceV1Server).CreateAnnotationSet(ctx, req.(*CreateAnnotationSetRequest))
	}
	return interceptor(ctx, in, info, handler)
}

func _AnnotationServiceV1_GetAnnotationSet_Handler(srv interface{}, ctx context.Context, dec func(interface{}) error, interceptor grpc.UnaryServerInterceptor) (interface{}, error) {
	in := new(GetAnnotationSetRequest)
	if err := dec(in); err != nil {
		return nil, err
	}
	if interceptor == nil {
		return srv.(AnnotationServiceV1Server).GetAnnotationSet(ctx, in)
	}
	info := &grpc.UnaryServerInfo{
		Server:     srv,
		FullMethod: "/google.genomics.v1.AnnotationServiceV1/GetAnnotationSet",
	}
	handler := func(ctx context.Context, req interface{}) (interface{}, error) {
		return srv.(AnnotationServiceV1Server).GetAnnotationSet(ctx, req.(*GetAnnotationSetRequest))
	}
	return interceptor(ctx, in, info, handler)
}

func _AnnotationServiceV1_UpdateAnnotationSet_Handler(srv interface{}, ctx context.Context, dec func(interface{}) error, interceptor grpc.UnaryServerInterceptor) (interface{}, error) {
	in := new(UpdateAnnotationSetRequest)
	if err := dec(in); err != nil {
		return nil, err
	}
	if interceptor == nil {
		return srv.(AnnotationServiceV1Server).UpdateAnnotationSet(ctx, in)
	}
	info := &grpc.UnaryServerInfo{
		Server:     srv,
		FullMethod: "/google.genomics.v1.AnnotationServiceV1/UpdateAnnotationSet",
	}
	handler := func(ctx context.Context, req interface{}) (interface{}, error) {
		return srv.(AnnotationServiceV1Server).UpdateAnnotationSet(ctx, req.(*UpdateAnnotationSetRequest))
	}
	return interceptor(ctx, in, info, handler)
}

func _AnnotationServiceV1_DeleteAnnotationSet_Handler(srv interface{}, ctx context.Context, dec func(interface{}) error, interceptor grpc.UnaryServerInterceptor) (interface{}, error) {
	in := new(DeleteAnnotationSetRequest)
	if err := dec(in); err != nil {
		return nil, err
	}
	if interceptor == nil {
		return srv.(AnnotationServiceV1Server).DeleteAnnotationSet(ctx, in)
	}
	info := &grpc.UnaryServerInfo{
		Server:     srv,
		FullMethod: "/google.genomics.v1.AnnotationServiceV1/DeleteAnnotationSet",
	}
	handler := func(ctx context.Context, req interface{}) (interface{}, error) {
		return srv.(AnnotationServiceV1Server).DeleteAnnotationSet(ctx, req.(*DeleteAnnotationSetRequest))
	}
	return interceptor(ctx, in, info, handler)
}

func _AnnotationServiceV1_SearchAnnotationSets_Handler(srv interface{}, ctx context.Context, dec func(interface{}) error, interceptor grpc.UnaryServerInterceptor) (interface{}, error) {
	in := new(SearchAnnotationSetsRequest)
	if err := dec(in); err != nil {
		return nil, err
	}
	if interceptor == nil {
		return srv.(AnnotationServiceV1Server).SearchAnnotationSets(ctx, in)
	}
	info := &grpc.UnaryServerInfo{
		Server:     srv,
		FullMethod: "/google.genomics.v1.AnnotationServiceV1/SearchAnnotationSets",
	}
	handler := func(ctx context.Context, req interface{}) (interface{}, error) {
		return srv.(AnnotationServiceV1Server).SearchAnnotationSets(ctx, req.(*SearchAnnotationSetsRequest))
	}
	return interceptor(ctx, in, info, handler)
}

func _AnnotationServiceV1_CreateAnnotation_Handler(srv interface{}, ctx context.Context, dec func(interface{}) error, interceptor grpc.UnaryServerInterceptor) (interface{}, error) {
	in := new(CreateAnnotationRequest)
	if err := dec(in); err != nil {
		return nil, err
	}
	if interceptor == nil {
		return srv.(AnnotationServiceV1Server).CreateAnnotation(ctx, in)
	}
	info := &grpc.UnaryServerInfo{
		Server:     srv,
		FullMethod: "/google.genomics.v1.AnnotationServiceV1/CreateAnnotation",
	}
	handler := func(ctx context.Context, req interface{}) (interface{}, error) {
		return srv.(AnnotationServiceV1Server).CreateAnnotation(ctx, req.(*CreateAnnotationRequest))
	}
	return interceptor(ctx, in, info, handler)
}

func _AnnotationServiceV1_BatchCreateAnnotations_Handler(srv interface{}, ctx context.Context, dec func(interface{}) error, interceptor grpc.UnaryServerInterceptor) (interface{}, error) {
	in := new(BatchCreateAnnotationsRequest)
	if err := dec(in); err != nil {
		return nil, err
	}
	if interceptor == nil {
		return srv.(AnnotationServiceV1Server).BatchCreateAnnotations(ctx, in)
	}
	info := &grpc.UnaryServerInfo{
		Server:     srv,
		FullMethod: "/google.genomics.v1.AnnotationServiceV1/BatchCreateAnnotations",
	}
	handler := func(ctx context.Context, req interface{}) (interface{}, error) {
		return srv.(AnnotationServiceV1Server).BatchCreateAnnotations(ctx, req.(*BatchCreateAnnotationsRequest))
	}
	return interceptor(ctx, in, info, handler)
}

func _AnnotationServiceV1_GetAnnotation_Handler(srv interface{}, ctx context.Context, dec func(interface{}) error, interceptor grpc.UnaryServerInterceptor) (interface{}, error) {
	in := new(GetAnnotationRequest)
	if err := dec(in); err != nil {
		return nil, err
	}
	if interceptor == nil {
		return srv.(AnnotationServiceV1Server).GetAnnotation(ctx, in)
	}
	info := &grpc.UnaryServerInfo{
		Server:     srv,
		FullMethod: "/google.genomics.v1.AnnotationServiceV1/GetAnnotation",
	}
	handler := func(ctx context.Context, req interface{}) (interface{}, error) {
		return srv.(AnnotationServiceV1Server).GetAnnotation(ctx, req.(*GetAnnotationRequest))
	}
	return interceptor(ctx, in, info, handler)
}

func _AnnotationServiceV1_UpdateAnnotation_Handler(srv interface{}, ctx context.Context, dec func(interface{}) error, interceptor grpc.UnaryServerInterceptor) (interface{}, error) {
	in := new(UpdateAnnotationRequest)
	if err := dec(in); err != nil {
		return nil, err
	}
	if interceptor == nil {
		return srv.(AnnotationServiceV1Server).UpdateAnnotation(ctx, in)
	}
	info := &grpc.UnaryServerInfo{
		Server:     srv,
		FullMethod: "/google.genomics.v1.AnnotationServiceV1/UpdateAnnotation",
	}
	handler := func(ctx context.Context, req interface{}) (interface{}, error) {
		return srv.(AnnotationServiceV1Server).UpdateAnnotation(ctx, req.(*UpdateAnnotationRequest))
	}
	return interceptor(ctx, in, info, handler)
}

func _AnnotationServiceV1_DeleteAnnotation_Handler(srv interface{}, ctx context.Context, dec func(interface{}) error, interceptor grpc.UnaryServerInterceptor) (interface{}, error) {
	in := new(DeleteAnnotationRequest)
	if err := dec(in); err != nil {
		return nil, err
	}
	if interceptor == nil {
		return srv.(AnnotationServiceV1Server).DeleteAnnotation(ctx, in)
	}
	info := &grpc.UnaryServerInfo{
		Server:     srv,
		FullMethod: "/google.genomics.v1.AnnotationServiceV1/DeleteAnnotation",
	}
	handler := func(ctx context.Context, req interface{}) (interface{}, error) {
		return srv.(AnnotationServiceV1Server).DeleteAnnotation(ctx, req.(*DeleteAnnotationRequest))
	}
	return interceptor(ctx, in, info, handler)
}

func _AnnotationServiceV1_SearchAnnotations_Handler(srv interface{}, ctx context.Context, dec func(interface{}) error, interceptor grpc.UnaryServerInterceptor) (interface{}, error) {
	in := new(SearchAnnotationsRequest)
	if err := dec(in); err != nil {
		return nil, err
	}
	if interceptor == nil {
		return srv.(AnnotationServiceV1Server).SearchAnnotations(ctx, in)
	}
	info := &grpc.UnaryServerInfo{
		Server:     srv,
		FullMethod: "/google.genomics.v1.AnnotationServiceV1/SearchAnnotations",
	}
	handler := func(ctx context.Context, req interface{}) (interface{}, error) {
		return srv.(AnnotationServiceV1Server).SearchAnnotations(ctx, req.(*SearchAnnotationsRequest))
	}
	return interceptor(ctx, in, info, handler)
}

var _AnnotationServiceV1_serviceDesc = grpc.ServiceDesc{
	ServiceName: "google.genomics.v1.AnnotationServiceV1",
	HandlerType: (*AnnotationServiceV1Server)(nil),
	Methods: []grpc.MethodDesc{
		{
			MethodName: "CreateAnnotationSet",
			Handler:    _AnnotationServiceV1_CreateAnnotationSet_Handler,
		},
		{
			MethodName: "GetAnnotationSet",
			Handler:    _AnnotationServiceV1_GetAnnotationSet_Handler,
		},
		{
			MethodName: "UpdateAnnotationSet",
			Handler:    _AnnotationServiceV1_UpdateAnnotationSet_Handler,
		},
		{
			MethodName: "DeleteAnnotationSet",
			Handler:    _AnnotationServiceV1_DeleteAnnotationSet_Handler,
		},
		{
			MethodName: "SearchAnnotationSets",
			Handler:    _AnnotationServiceV1_SearchAnnotationSets_Handler,
		},
		{
			MethodName: "CreateAnnotation",
			Handler:    _AnnotationServiceV1_CreateAnnotation_Handler,
		},
		{
			MethodName: "BatchCreateAnnotations",
			Handler:    _AnnotationServiceV1_BatchCreateAnnotations_Handler,
		},
		{
			MethodName: "GetAnnotation",
			Handler:    _AnnotationServiceV1_GetAnnotation_Handler,
		},
		{
			MethodName: "UpdateAnnotation",
			Handler:    _AnnotationServiceV1_UpdateAnnotation_Handler,
		},
		{
			MethodName: "DeleteAnnotation",
			Handler:    _AnnotationServiceV1_DeleteAnnotation_Handler,
		},
		{
			MethodName: "SearchAnnotations",
			Handler:    _AnnotationServiceV1_SearchAnnotations_Handler,
		},
	},
	Streams:  []grpc.StreamDesc{},
	Metadata: "google/genomics/v1/annotations.proto",
}

func init() {
	proto.RegisterFile("google/genomics/v1/annotations.proto", fileDescriptor_annotations_22f61783ae14922a)
}

var fileDescriptor_annotations_22f61783ae14922a = []byte{
	// 2188 bytes of a gzipped FileDescriptorProto
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}