googleapis/genomics/v1/readgroup.pb.go

// Code generated by protoc-gen-go. DO NOT EDIT.
// source: google/genomics/v1/readgroup.proto

package genomics // import "google.golang.org/genproto/googleapis/genomics/v1"

import proto "github.com/golang/protobuf/proto"
import fmt "fmt"
import math "math"
import _struct "github.com/golang/protobuf/ptypes/struct"
import _ "google.golang.org/genproto/googleapis/api/annotations"

// Reference imports to suppress errors if they are not otherwise used.
var _ = proto.Marshal
var _ = fmt.Errorf
var _ = math.Inf

// This is a compile-time assertion to ensure that this generated file
// is compatible with the proto package it is being compiled against.
// A compilation error at this line likely means your copy of the
// proto package needs to be updated.
const _ = proto.ProtoPackageIsVersion2 // please upgrade the proto package

// A read group is all the data that's processed the same way by the sequencer.
type ReadGroup struct {
	// The server-generated read group ID, unique for all read groups.
	// Note: This is different than the @RG ID field in the SAM spec. For that
	// value, see [name][google.genomics.v1.ReadGroup.name].
	Id string `protobuf:"bytes,1,opt,name=id,proto3" json:"id,omitempty"`
	// The dataset to which this read group belongs.
	DatasetId string `protobuf:"bytes,2,opt,name=dataset_id,json=datasetId,proto3" json:"dataset_id,omitempty"`
	// The read group name. This corresponds to the @RG ID field in the SAM spec.
	Name string `protobuf:"bytes,3,opt,name=name,proto3" json:"name,omitempty"`
	// A free-form text description of this read group.
	Description string `protobuf:"bytes,4,opt,name=description,proto3" json:"description,omitempty"`
	// A client-supplied sample identifier for the reads in this read group.
	SampleId string `protobuf:"bytes,5,opt,name=sample_id,json=sampleId,proto3" json:"sample_id,omitempty"`
	// The experiment used to generate this read group.
	Experiment *ReadGroup_Experiment `protobuf:"bytes,6,opt,name=experiment,proto3" json:"experiment,omitempty"`
	// The predicted insert size of this read group. The insert size is the length
	// the sequenced DNA fragment from end-to-end, not including the adapters.
	PredictedInsertSize int32 `protobuf:"varint,7,opt,name=predicted_insert_size,json=predictedInsertSize,proto3" json:"predicted_insert_size,omitempty"`
	// The programs used to generate this read group. Programs are always
	// identical for all read groups within a read group set. For this reason,
	// only the first read group in a returned set will have this field
	// populated.
	Programs []*ReadGroup_Program `protobuf:"bytes,10,rep,name=programs,proto3" json:"programs,omitempty"`
	// The reference set the reads in this read group are aligned to.
	ReferenceSetId string `protobuf:"bytes,11,opt,name=reference_set_id,json=referenceSetId,proto3" json:"reference_set_id,omitempty"`
	// A map of additional read group information. This must be of the form
	// map<string, string[]> (string key mapping to a list of string values).
	Info                 map[string]*_struct.ListValue `protobuf:"bytes,12,rep,name=info,proto3" json:"info,omitempty" protobuf_key:"bytes,1,opt,name=key,proto3" protobuf_val:"bytes,2,opt,name=value,proto3"`
	XXX_NoUnkeyedLiteral struct{}                      `json:"-"`
	XXX_unrecognized     []byte                        `json:"-"`
	XXX_sizecache        int32                         `json:"-"`
}

func (m *ReadGroup) Reset()         { *m = ReadGroup{} }
func (m *ReadGroup) String() string { return proto.CompactTextString(m) }
func (*ReadGroup) ProtoMessage()    {}
func (*ReadGroup) Descriptor() ([]byte, []int) {
	return fileDescriptor_readgroup_d1ee37f21a1efad6, []int{0}
}
func (m *ReadGroup) XXX_Unmarshal(b []byte) error {
	return xxx_messageInfo_ReadGroup.Unmarshal(m, b)
}
func (m *ReadGroup) XXX_Marshal(b []byte, deterministic bool) ([]byte, error) {
	return xxx_messageInfo_ReadGroup.Marshal(b, m, deterministic)
}
func (dst *ReadGroup) XXX_Merge(src proto.Message) {
	xxx_messageInfo_ReadGroup.Merge(dst, src)
}
func (m *ReadGroup) XXX_Size() int {
	return xxx_messageInfo_ReadGroup.Size(m)
}
func (m *ReadGroup) XXX_DiscardUnknown() {
	xxx_messageInfo_ReadGroup.DiscardUnknown(m)
}

var xxx_messageInfo_ReadGroup proto.InternalMessageInfo

func (m *ReadGroup) GetId() string {
	if m != nil {
		return m.Id
	}
	return ""
}

func (m *ReadGroup) GetDatasetId() string {
	if m != nil {
		return m.DatasetId
	}
	return ""
}

func (m *ReadGroup) GetName() string {
	if m != nil {
		return m.Name
	}
	return ""
}

func (m *ReadGroup) GetDescription() string {
	if m != nil {
		return m.Description
	}
	return ""
}

func (m *ReadGroup) GetSampleId() string {
	if m != nil {
		return m.SampleId
	}
	return ""
}

func (m *ReadGroup) GetExperiment() *ReadGroup_Experiment {
	if m != nil {
		return m.Experiment
	}
	return nil
}

func (m *ReadGroup) GetPredictedInsertSize() int32 {
	if m != nil {
		return m.PredictedInsertSize
	}
	return 0
}

func (m *ReadGroup) GetPrograms() []*ReadGroup_Program {
	if m != nil {
		return m.Programs
	}
	return nil
}

func (m *ReadGroup) GetReferenceSetId() string {
	if m != nil {
		return m.ReferenceSetId
	}
	return ""
}

func (m *ReadGroup) GetInfo() map[string]*_struct.ListValue {
	if m != nil {
		return m.Info
	}
	return nil
}

type ReadGroup_Experiment struct {
	// A client-supplied library identifier; a library is a collection of DNA
	// fragments which have been prepared for sequencing from a sample. This
	// field is important for quality control as error or bias can be introduced
	// during sample preparation.
	LibraryId string `protobuf:"bytes,1,opt,name=library_id,json=libraryId,proto3" json:"library_id,omitempty"`
	// The platform unit used as part of this experiment, for example
	// flowcell-barcode.lane for Illumina or slide for SOLiD. Corresponds to the
	// @RG PU field in the SAM spec.
	PlatformUnit string `protobuf:"bytes,2,opt,name=platform_unit,json=platformUnit,proto3" json:"platform_unit,omitempty"`
	// The sequencing center used as part of this experiment.
	SequencingCenter string `protobuf:"bytes,3,opt,name=sequencing_center,json=sequencingCenter,proto3" json:"sequencing_center,omitempty"`
	// The instrument model used as part of this experiment. This maps to
	// sequencing technology in the SAM spec.
	InstrumentModel      string   `protobuf:"bytes,4,opt,name=instrument_model,json=instrumentModel,proto3" json:"instrument_model,omitempty"`
	XXX_NoUnkeyedLiteral struct{} `json:"-"`
	XXX_unrecognized     []byte   `json:"-"`
	XXX_sizecache        int32    `json:"-"`
}

func (m *ReadGroup_Experiment) Reset()         { *m = ReadGroup_Experiment{} }
func (m *ReadGroup_Experiment) String() string { return proto.CompactTextString(m) }
func (*ReadGroup_Experiment) ProtoMessage()    {}
func (*ReadGroup_Experiment) Descriptor() ([]byte, []int) {
	return fileDescriptor_readgroup_d1ee37f21a1efad6, []int{0, 0}
}
func (m *ReadGroup_Experiment) XXX_Unmarshal(b []byte) error {
	return xxx_messageInfo_ReadGroup_Experiment.Unmarshal(m, b)
}
func (m *ReadGroup_Experiment) XXX_Marshal(b []byte, deterministic bool) ([]byte, error) {
	return xxx_messageInfo_ReadGroup_Experiment.Marshal(b, m, deterministic)
}
func (dst *ReadGroup_Experiment) XXX_Merge(src proto.Message) {
	xxx_messageInfo_ReadGroup_Experiment.Merge(dst, src)
}
func (m *ReadGroup_Experiment) XXX_Size() int {
	return xxx_messageInfo_ReadGroup_Experiment.Size(m)
}
func (m *ReadGroup_Experiment) XXX_DiscardUnknown() {
	xxx_messageInfo_ReadGroup_Experiment.DiscardUnknown(m)
}

var xxx_messageInfo_ReadGroup_Experiment proto.InternalMessageInfo

func (m *ReadGroup_Experiment) GetLibraryId() string {
	if m != nil {
		return m.LibraryId
	}
	return ""
}

func (m *ReadGroup_Experiment) GetPlatformUnit() string {
	if m != nil {
		return m.PlatformUnit
	}
	return ""
}

func (m *ReadGroup_Experiment) GetSequencingCenter() string {
	if m != nil {
		return m.SequencingCenter
	}
	return ""
}

func (m *ReadGroup_Experiment) GetInstrumentModel() string {
	if m != nil {
		return m.InstrumentModel
	}
	return ""
}

type ReadGroup_Program struct {
	// The command line used to run this program.
	CommandLine string `protobuf:"bytes,1,opt,name=command_line,json=commandLine,proto3" json:"command_line,omitempty"`
	// The user specified locally unique ID of the program. Used along with
	// `prevProgramId` to define an ordering between programs.
	Id string `protobuf:"bytes,2,opt,name=id,proto3" json:"id,omitempty"`
	// The display name of the program. This is typically the colloquial name of
	// the tool used, for example 'bwa' or 'picard'.
	Name string `protobuf:"bytes,3,opt,name=name,proto3" json:"name,omitempty"`
	// The ID of the program run before this one.
	PrevProgramId string `protobuf:"bytes,4,opt,name=prev_program_id,json=prevProgramId,proto3" json:"prev_program_id,omitempty"`
	// The version of the program run.
	Version              string   `protobuf:"bytes,5,opt,name=version,proto3" json:"version,omitempty"`
	XXX_NoUnkeyedLiteral struct{} `json:"-"`
	XXX_unrecognized     []byte   `json:"-"`
	XXX_sizecache        int32    `json:"-"`
}

func (m *ReadGroup_Program) Reset()         { *m = ReadGroup_Program{} }
func (m *ReadGroup_Program) String() string { return proto.CompactTextString(m) }
func (*ReadGroup_Program) ProtoMessage()    {}
func (*ReadGroup_Program) Descriptor() ([]byte, []int) {
	return fileDescriptor_readgroup_d1ee37f21a1efad6, []int{0, 1}
}
func (m *ReadGroup_Program) XXX_Unmarshal(b []byte) error {
	return xxx_messageInfo_ReadGroup_Program.Unmarshal(m, b)
}
func (m *ReadGroup_Program) XXX_Marshal(b []byte, deterministic bool) ([]byte, error) {
	return xxx_messageInfo_ReadGroup_Program.Marshal(b, m, deterministic)
}
func (dst *ReadGroup_Program) XXX_Merge(src proto.Message) {
	xxx_messageInfo_ReadGroup_Program.Merge(dst, src)
}
func (m *ReadGroup_Program) XXX_Size() int {
	return xxx_messageInfo_ReadGroup_Program.Size(m)
}
func (m *ReadGroup_Program) XXX_DiscardUnknown() {
	xxx_messageInfo_ReadGroup_Program.DiscardUnknown(m)
}

var xxx_messageInfo_ReadGroup_Program proto.InternalMessageInfo

func (m *ReadGroup_Program) GetCommandLine() string {
	if m != nil {
		return m.CommandLine
	}
	return ""
}

func (m *ReadGroup_Program) GetId() string {
	if m != nil {
		return m.Id
	}
	return ""
}

func (m *ReadGroup_Program) GetName() string {
	if m != nil {
		return m.Name
	}
	return ""
}

func (m *ReadGroup_Program) GetPrevProgramId() string {
	if m != nil {
		return m.PrevProgramId
	}
	return ""
}

func (m *ReadGroup_Program) GetVersion() string {
	if m != nil {
		return m.Version
	}
	return ""
}

func init() {
	proto.RegisterType((*ReadGroup)(nil), "google.genomics.v1.ReadGroup")
	proto.RegisterMapType((map[string]*_struct.ListValue)(nil), "google.genomics.v1.ReadGroup.InfoEntry")
	proto.RegisterType((*ReadGroup_Experiment)(nil), "google.genomics.v1.ReadGroup.Experiment")
	proto.RegisterType((*ReadGroup_Program)(nil), "google.genomics.v1.ReadGroup.Program")
}

func init() {
	proto.RegisterFile("google/genomics/v1/readgroup.proto", fileDescriptor_readgroup_d1ee37f21a1efad6)
}

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